3EOG - JenaLib

Title :   CO-CRYSTALLIZATION SHOWING EXON RECOGNITION BY A GROUP II INTRON

Authors :   N. Toor, K. Rajashankar, K. S. Keating, A. M. Pyle

Date :   26 Sep 08 (Deposition) - 28 Oct 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.39

Chains :   Asym./Biol. Unit : A,B

Keywords :   Rna, Ribonucleic Acid, Intron, Group Ii, Exon (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Toor, K. Rajashankar, K. S. Keating, A. M. Pyle
Structural Basis For Exon Recognition By A Group Ii Intron.
Nat. Struct. Mol. Biol. V. 15 1221 2008
PubMed-ID: 18953333 | Reference-DOI: 10.1038/NSMB.1509
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 42)

Sites (33, 33)

Asymmetric Unit (33, 33)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	C A:119 , A A:174 , U A:238 , G A:239	BINDING SITE FOR RESIDUE MG A 413
02	AC2	SOFTWARE	G A:359 , U A:375 , C A:377 , U B:4 , U B:5	BINDING SITE FOR RESIDUE MG A 414
03	AC3	SOFTWARE	C A:358 , G A:359 , C A:377 , U B:5	BINDING SITE FOR RESIDUE MG A 415
04	AC4	SOFTWARE	G A:107	BINDING SITE FOR RESIDUE MG A 416
05	AC5	SOFTWARE	A A:110 , G A:111	BINDING SITE FOR RESIDUE MG A 417
06	AC6	SOFTWARE	C A:372	BINDING SITE FOR RESIDUE MG A 418
07	AC7	SOFTWARE	A A:61	BINDING SITE FOR RESIDUE MG A 422
08	AC8	SOFTWARE	U A:66 , A A:67	BINDING SITE FOR RESIDUE MG A 423
09	AC9	SOFTWARE	C A:116 , G A:117	BINDING SITE FOR RESIDUE MG A 424
10	BC1	SOFTWARE	G A:239	BINDING SITE FOR RESIDUE MG A 425
11	BC2	SOFTWARE	A A:154 , G A:155 , G A:156	BINDING SITE FOR RESIDUE MG A 426
12	BC3	SOFTWARE	G A:170	BINDING SITE FOR RESIDUE MG A 427
13	BC4	SOFTWARE	A A:184	BINDING SITE FOR RESIDUE MG A 428
14	BC5	SOFTWARE	A A:186	BINDING SITE FOR RESIDUE MG A 429
15	BC6	SOFTWARE	A A:181 , A A:223	BINDING SITE FOR RESIDUE MG A 430
16	BC7	SOFTWARE	G A:135 , G A:136	BINDING SITE FOR RESIDUE MG A 431
17	BC8	SOFTWARE	G A:243	BINDING SITE FOR RESIDUE MG A 432
18	BC9	SOFTWARE	U A:285	BINDING SITE FOR RESIDUE MG A 434
19	CC1	SOFTWARE	C A:286 , A A:287 , G A:288	BINDING SITE FOR RESIDUE MG A 435
20	CC2	SOFTWARE	A A:355 , A A:356	BINDING SITE FOR RESIDUE MG A 436
21	CC3	SOFTWARE	G A:288 , C A:358 , G A:359 , C A:377	BINDING SITE FOR RESIDUE MG A 437
22	CC4	SOFTWARE	C A:360 , G A:373 , G A:374	BINDING SITE FOR RESIDUE MG A 438
23	CC5	SOFTWARE	A A:370	BINDING SITE FOR RESIDUE MG A 439
24	CC6	SOFTWARE	U A:4 , G A:107 , U A:375 , A A:376	BINDING SITE FOR RESIDUE MG A 440
25	CC7	SOFTWARE	G A:320	BINDING SITE FOR RESIDUE MG A 441
26	CC8	SOFTWARE	G A:269	BINDING SITE FOR RESIDUE MG A 442
27	CC9	SOFTWARE	A A:67 , G A:68	BINDING SITE FOR RESIDUE MG A 443
28	DC1	SOFTWARE	G A:80	BINDING SITE FOR RESIDUE K A 444
29	DC2	SOFTWARE	C A:86 , U A:96 , G A:97	BINDING SITE FOR RESIDUE K A 445
30	DC3	SOFTWARE	G A:275	BINDING SITE FOR RESIDUE K A 449
31	DC4	SOFTWARE	U A:365	BINDING SITE FOR RESIDUE K A 450
32	DC5	SOFTWARE	U A:4 , G A:5 , A A:376	BINDING SITE FOR RESIDUE K A 451
33	DC6	SOFTWARE	G A:15	BINDING SITE FOR RESIDUE K A 454

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:RNA  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
                 3eog A   3 GUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGCAAGGGUGUCCGUGGCGACAUGGAAUCUGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAUGAGGCUAGGUAUCAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAAAGUUGGUACAGAGUAAAUGAAGCAGAUUGAUGAAGGGAAAGACUGCAUUCUUACCCGGGGAGGUCUGGAAACAGAAGUCAGCAGAAGUCAUAGUACCCUGUUCGCAGGGGAAGGACGGAACAAGUAUGGCGUUCGCGCCUAAGCUUGAACCGCCGUAUACCGAACGGUACGUACGGUGGUGUG 390
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382

Chain B from PDB  Type:RNA  Length:6
                                      
                 3eog B   1 UUAUUA   6

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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