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Title :   CRYSTAL STRUCTURE OF NTF-2 LIKE PROTEIN OF UNKNOWN FUNCTION (YP_553245.1) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.85 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   25 Sep 08 (Deposition) - 07 Oct 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Yp_553245. 1, Ntf-2 Like Protein Of Unknown Function, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Ntf-2 Like Protein Of Unknown Function (Yp_553245. 1) From Burkholderia Xenovorans Lb400 At 1. 85 A Resolution
To Be Published
PubMed: search

Molecule 1 - UNCHARACTERIZED NTF-2 LIKE PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	YP_553245.1, BXENO_B0927, BXE_B2092
	Organism Scientific	:	BURKHOLDERIA XENOVORANS LB400
	Organism Taxid	:	266265

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 7)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CA	1	Ligand/Ion	CALCIUM ION
3	MSE	3	Mod. Amino Acid	SELENOMETHIONINE
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 1 (4, 12)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
4	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:30 , ASP A:31 , ASP A:32 , HOH A:178 , HOH A:191	BINDING SITE FOR RESIDUE CA A 128
2	AC2	SOFTWARE	ILE A:34 , VAL A:103 , HOH A:155 , HOH A:226 , HOH A:253	BINDING SITE FOR RESIDUE ACT A 129
3	AC3	SOFTWARE	LEU A:53 , HIS A:56 , TRP A:122	BINDING SITE FOR RESIDUE PEG A 130
4	AC4	SOFTWARE	ALA A:89 , PHE A:109 , ASP A:111 , PHE A:113 , GLU A:114 , ARG A:119	BINDING SITE FOR RESIDUE PG4 A 131

(no "SS Bond" information available for 3EN8)

Asymmetric Unit

No.	Residues
1	His A:57	-	Pro A:58

(no "SAP(SNP)/Variant" information available for 3EN8)

(no "PROSITE Motif" information available for 3EN8)

(no "Exon" information available for 3EN8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:128
 aligned with Q13PU4_PARXL | Q13PU4 from UniProtKB/TrEMBL  Length:127

    Alignment length:128
                             1                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119        
         Q13PU4_PARXL     - -MREEKIREALNAHWQASAAGDFDAEHDIYDDDAICDYPQSGERILGRMNLQALRSHHPGKPAGFEVRRIQGEGNLWITEYSISYNGRPAYTVSIMEFRNGKVVHETQYFSDPFEAPGWRSQWVQQIG 127
               SCOP domains -d3en8a1 A:1-127 Uncharacterized protein BxeB2092                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......eeehhhhhhhhhhhh.....eeeeeeeeee..eeeeeeeeee..eeeeeeeeeeee..eeeeeeeeee.....hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3en8 A   0 GmREEKIREALNAHWQASAAGDFDAEHDIYDDDAICDYPQSGERILGRmNLQALRSHHPGKPAGFEVRRIQGEGNLWITEYSISYNGRPAYTVSImEFRNGKVVHETQYFSDPFEAPGWRSQWVQQIG 127
                             |       9        19        29        39        49        59        69        79        89     |  99       109       119        
                             |                                             48-MSE                                         95-MSE                            
                             1-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

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Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Cystatin-like (403)

Superfamily: NTF2-like (231)

Family: Rpa4348-like (2)

Protein domain: Uncharacterized protein BxeB2092 (1)

Burkholderia xenovorans [TaxId: 36873] (1)

d3en8a1

A:1-127

(no "CATH Domain" information available for 3EN8)

(no "Pfam Domain" information available for 3EN8)

Asymmetric Unit(hide GO term definitions)

Chain A (Q13PU4_PARXL | Q13PU4)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

Asymmetric Unit
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	Cis Peptide Bonds
		His A:57 - Pro A:58	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (5, 7)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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SAPs(SNPs)/Variants (0, 0)

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