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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE PERIPLASMIC PROTEIN OF UNKNOWN FUNCTION (BVU_2443) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.64 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  22 Sep 08  (Deposition) - 14 Oct 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.64
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Blip-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Periplasmic Protein Of Unknow Function (Yp_001299723. 1) From Bacteroides Vulgatus Atcc 8482 At 1. 64 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PERIPLASMIC PROTEIN
    Atcc: 8482
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_001299723.1, BVU_2443
    Organism Scientific: BACTEROIDES VULGATUS ATCC 8482
    Organism Taxid: 435590

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CIT-1Ligand/IonCITRIC ACID
2MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:60 , ASN A:76 , SER A:77 , HOH A:208 , HOH A:211 , HOH A:244 , HOH A:272 , THR B:60 , ASN B:76 , SER B:77BINDING SITE FOR RESIDUE CIT B 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ELG)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:127
 aligned with A6L337_BACV8 | A6L337 from UniProtKB/TrEMBL  Length:146

    Alignment length:127
                                    29        39        49        59        69        79        89        99       109       119       129       139       
         A6L337_BACV8    20 AGDVVTRDVNKLPVAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVKLADGIELEFNSKGEWLEIDCKNKSVPSTFIPQAISKYMKANYNGHKTVKIERNRKGYELTLENGLEVDFDQFGGFLKLSD 146
               SCOP domains d3elga1 A:20-146 Putative periplasmic protein BVU2443                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhhhhhhhhhhhhhhhh....eeeeeeee.....eeeeeee....eeee.....eeeee......hhhhhhhhhhhhhhhhh....eeeeeee..eeeeee....eeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3elg A  20 AGDVVTRDVNKLPVAAREmIGKHFSQTKVAYIKIEKDLFQTTSYDVKLADGIELEFNSKGEWLEIDCKNKSVPSTFIPQAISKYmKANYNGHKTVKIERNRKGYELTLENGLEVDFDQFGGFLKLSD 146
                                    29        39        49        59        69        79        89        99    |  109       119       129       139       
                                             38-MSE                                                           104-MSE                                      


Chain B from PDB  Type:PROTEIN  Length:126
 aligned with A6L337_BACV8 | A6L337 from UniProtKB/TrEMBL  Length:146

    Alignment length:126
                                    30        40        50        60        70        80        90       100       110       120       130       140      
         A6L337_BACV8    21 GDVVTRDVNKLPVAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVKLADGIELEFNSKGEWLEIDCKNKSVPSTFIPQAISKYMKANYNGHKTVKIERNRKGYELTLENGLEVDFDQFGGFLKLSD 146
               SCOP domains d3elgb_ B: Putative periplasmic protein BVU2443                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhh....eeeeeeee.....eeeeeee....eeee.....eeeee......hhhhhhhhhhhhhhhhhh...eeeeeee..eeeeee....eeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3elg B  21 GDVVTRDVNKLPVAAREmIGKHFSQTKVAYIKIEKDLFQTTSYDVKLADGIELEFNSKGEWLEIDCKNKSVPSTFIPQAISKYmKANYNGHKTVKIERNRKGYELTLENGLEVDFDQFGGFLKLSD 146
                                    30       |40        50        60        70        80        90       100   |   110       120       130       140      
                                            38-MSE                                                           104-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ELG)

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