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(-) Description

Title :  THE 2.6 ANGSTROM CRYSTAL STRUCTURE OF CHBP, THE CIF HOMOLOGUE FROM BURKHOLDERIA PSEUDOMALLEI
 
Authors :  Q. Yao, Y. Zhu, F. Shao
Date :  17 Sep 08  (Deposition) - 03 Feb 09  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Papain-Like Fold, Apain Superfamily, Hydrolytic Enzyme, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Yao, J. Cui, Y. Zhu, G. Wang, L. Hu, C. Long, R. Cao, X. Liu, N. Huang, S. Chen, L. Liu, F. Shao
A Bacterial Type Iii Effector Family Uses The Papain-Like Hydrolytic Activity To Arrest The Host Cell Cycle
Proc. Natl. Acad. Sci. Usa V. 106 3716 2009
PubMed-ID: 19225106  |  Reference-DOI: 10.1073/PNAS.0900212106

(-) Compounds

Molecule 1 - PUTATIVE ATP/GTP BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-2
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 48-328
    Gene: YP_111397
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI
    Organism Taxid: 28450
    Strain: K96243
    Synonym: THE EPEC EFFECTOR CIF HOMOLOGUE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2OCS2Mod. Amino AcidCYSTEINESULFONIC ACID
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2OCS1Mod. Amino AcidCYSTEINESULFONIC ACID
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2OCS1Mod. Amino AcidCYSTEINESULFONIC ACID

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3EIT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3EIT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3EIT)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:244
 aligned with Q63KH5_BURPS | Q63KH5 from UniProtKB/TrEMBL  Length:328

    Alignment length:249
                                    88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318         
         Q63KH5_BURPS    79 KHRVTLRKATLASLMQSLSGESSNRVMWNDRYDTLLIARDPREIKNAIEKSVTDFGGLENYKELTGGADPFALMTPVCGLSANNIFKLMTEKDVPIDPTSIEYLENTSFAEHVNTLDSHKNYVVIVNDGRLGHKFLIDLPALTQGPRTAYIIQSDLGGGALPAVRVEDWISRRGSDPVSLDELNQLLSKDFSKMPDDVQTRLLASILQIDKDPHKVDIKKLHLDGKLRFASHEYDFRQFQRNAQYVAGL 327
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..........hhhhhhhhhhhhhhh................hhhhhhhhh....eeeeeeee....eeeeeee..-----...eee............hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.....eeeeeeeehhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3eit A  79 KHRVTLRKATLASLmQSLSGESSNRVmWNDRYDTLLIARDPREIKNAIEKSVTDFGGLENYKELTGGADPFALmTPVcGLSANNIFKLmTEKDVPIDPTSIEYLENTSFAEHVNTLDSHKNYVVIVNDGRLGHKFLIDLPA-----RTAYIIQSDLGGGALPAVRVEDWISRRGSDPVSLDELNQLLSKDFSKmPDDVQTRLLASILQIDKDPHKVDIKKLHLDGKLRFASHEYDFRQFQRNAQYVAGL 327
                                    88    |   98      |108       118       128       138       148   |   158       168       178       188       198       208       218|     |228       238       248       258       268   |   278       288       298       308       318         
                                         93-MSE     105-MSE                                        152-MSE        167-MSE                                             219   225                                            272-MSE                                                   
                                                                                                       156-OCS                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:244
 aligned with Q63KH5_BURPS | Q63KH5 from UniProtKB/TrEMBL  Length:328

    Alignment length:248
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319        
         Q63KH5_BURPS    80 HRVTLRKATLASLMQSLSGESSNRVMWNDRYDTLLIARDPREIKNAIEKSVTDFGGLENYKELTGGADPFALMTPVCGLSANNIFKLMTEKDVPIDPTSIEYLENTSFAEHVNTLDSHKNYVVIVNDGRLGHKFLIDLPALTQGPRTAYIIQSDLGGGALPAVRVEDWISRRGSDPVSLDELNQLLSKDFSKMPDDVQTRLLASILQIDKDPHKVDIKKLHLDGKLRFASHEYDFRQFQRNAQYVAGL 327
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...........hhhhhhhhhhhhhhh.....hhhhh......hhhhhhh......eeeeeeee....eeeeeee..----....eee............hhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.....eeeeeeeehhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3eit B  80 HRVTLRKATLASLmQSLSGESSNRVmWNDRYDTLLIARDPREIKNAIEKSVTDFGGLENYKELTGGADPFALmTPVcGLSANNIFKLmTEKDVPIDPTSIEYLENTSFAEHVNTLDSHKNYVVIVNDGRLGHKFLIDLPA----PRTAYIIQSDLGGGALPAVRVEDWISRRGSDPVSLDELNQLLSKDFSKmPDDVQTRLLASILQIDKDPHKVDIKKLHLDGKLRFASHEYDFRQFQRNAQYVAGL 327
                                    89   |    99     | 109       119       129       139       149  |   |159       169       179       189       199       209       219    |  229       239       249       259       269  |    279       289       299       309       319        
                                        93-MSE     105-MSE                                        152-MSE        167-MSE                                             219  224                                             272-MSE                                                   
                                                                                                      156-OCS
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3EIT)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3EIT)

(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q63KH5_BURPS | Q63KH5: 3eir 3gqm 4hcn 4hcp

(-) Related Entries Specified in the PDB File

3eir