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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF D-3-HYDROXYBUTYRATE DEHYDROGENASE, PREPARED IN THE PRESENCE OF THE SUBSTRATE D-3-HYDROXYBUTYRATE AND NAD(+)

Authors :   M. M. Hoque, S. Shimizu, E. C. M. Juan, Y. Sato, M. T. Hossain, T. Yamamoto S. Imamura, H. Amano, K. Suzuki, T. Sekiguchi, M. Tsunoda, A. Takenaka

Date :   06 Jan 12 (Deposition) - 08 Feb 12 (Release) - 08 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Nad Dependent Enzymes, Ketone Bodies, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. M. Hoque, S. Shimizu, E. C. M. Juan, Y. Sato, M. T. Hossain, T. Yamamoto, S. Imamura, K. Suzuki, H. Amano, T. Sekiguchi, M. Tsunoda A. Takenaka
Structure Of D-3-Hydroxybutyrate Dehydrogenase Prepared In The Presence Of The Substrate D-3-Hydroxybutyrate And Nad+.
Acta Crystallogr. , Sect. F V. 65 331 2009
PubMed-ID: 19342772 | Reference-DOI: 10.1107/S1744309109008537

Molecule 1 - D-3-HYDROXYBUTYRATE DEHYDROGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.30
	Organism Scientific	:	ALCALIGENES FAECALIS
	Organism Taxid	:	511

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (6, 21)

No.	Name	Count	Type	Full Name
1	3HR	4	Ligand/Ion	(3R)-3-HYDROXYBUTANOIC ACID
2	AAE	4	Ligand/Ion	ACETOACETIC ACID
3	CA	2	Ligand/Ion	CALCIUM ION
4	CL	3	Ligand/Ion	CHLORIDE ION
5	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6	NAI	4	Ligand/Ion	1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:260 , HOH A:446 , HOH A:466 , VAL C:147 , ARG C:260	BINDING SITE FOR RESIDUE CA A 301
02	AC2	SOFTWARE	VAL A:150 , LYS A:219 , HOH C:410	BINDING SITE FOR RESIDUE CL A 302
03	AC3	SOFTWARE	GLY A:11 , THR A:13 , SER A:14 , GLY A:15 , ILE A:16 , PHE A:36 , ASP A:63 , LEU A:64 , ASN A:90 , ALA A:91 , GLY A:92 , LEU A:113 , ALA A:141 , TYR A:155 , LYS A:159 , PRO A:185 , GLY A:186 , VAL A:188 , THR A:190 , PRO A:191 , LEU A:192 , VAL A:193 , 3HR A:305 , AAE A:306 , ASP C:66	BINDING SITE FOR RESIDUE NAD A 303
04	AC4	SOFTWARE	GLY A:11 , THR A:13 , SER A:14 , GLY A:15 , ILE A:16 , PHE A:36 , ASP A:63 , LEU A:64 , ASN A:90 , ALA A:91 , GLY A:92 , LEU A:113 , ALA A:141 , SER A:142 , TYR A:155 , LYS A:159 , PRO A:185 , GLY A:186 , VAL A:188 , THR A:190 , PRO A:191 , LEU A:192 , VAL A:193 , 3HR A:305 , AAE A:306 , ASP C:66	BINDING SITE FOR RESIDUE NAI A 304
05	AC5	SOFTWARE	GLN A:94 , SER A:142 , HIS A:144 , LYS A:152 , TYR A:155 , TRP A:187 , LEU A:192 , GLN A:196 , TRP A:257 , NAD A:303 , NAI A:304	BINDING SITE FOR RESIDUE 3HR A 305
06	AC6	SOFTWARE	GLN A:94 , SER A:142 , HIS A:144 , LYS A:152 , TYR A:155 , GLY A:186 , TRP A:187 , LEU A:192 , GLN A:196 , TRP A:257 , NAD A:303 , NAI A:304	BINDING SITE FOR RESIDUE AAE A 306
07	AC7	SOFTWARE	ARG B:260 , ARG D:260 , HOH D:402	BINDING SITE FOR RESIDUE CA B 301
08	AC8	SOFTWARE	VAL B:150 , LYS B:219	BINDING SITE FOR RESIDUE CL B 302
09	AC9	SOFTWARE	GLY B:11 , THR B:13 , SER B:14 , GLY B:15 , ILE B:16 , PHE B:36 , ASP B:63 , LEU B:64 , ASN B:90 , ALA B:91 , GLY B:92 , LEU B:113 , ALA B:141 , SER B:142 , TYR B:155 , LYS B:159 , GLY B:186 , TRP B:187 , VAL B:188 , THR B:190 , PRO B:191 , LEU B:192 , VAL B:193 , 3HR B:305 , AAE B:306	BINDING SITE FOR RESIDUE NAD B 303
10	BC1	SOFTWARE	GLY B:11 , THR B:13 , SER B:14 , GLY B:15 , ILE B:16 , PHE B:36 , ASP B:63 , LEU B:64 , ASN B:90 , ALA B:91 , GLY B:92 , LEU B:113 , ALA B:141 , SER B:142 , TYR B:155 , LYS B:159 , GLY B:186 , TRP B:187 , VAL B:188 , THR B:190 , PRO B:191 , LEU B:192 , VAL B:193 , 3HR B:305 , AAE B:306	BINDING SITE FOR RESIDUE NAI B 304
11	BC2	SOFTWARE	GLN B:94 , SER B:142 , HIS B:144 , LYS B:152 , TYR B:155 , TRP B:187 , GLN B:196 , NAD B:303 , NAI B:304	BINDING SITE FOR RESIDUE 3HR B 305
12	BC3	SOFTWARE	GLN B:94 , SER B:142 , HIS B:144 , LYS B:152 , TYR B:155 , TRP B:187 , GLN B:196 , NAD B:303 , NAI B:304	BINDING SITE FOR RESIDUE AAE B 306
13	BC4	SOFTWARE	GLY C:11 , THR C:13 , SER C:14 , GLY C:15 , ILE C:16 , PHE C:36 , ASP C:63 , LEU C:64 , ASN C:90 , ALA C:91 , GLY C:92 , LEU C:113 , ALA C:141 , SER C:142 , TYR C:155 , LYS C:159 , PRO C:185 , GLY C:186 , TRP C:187 , VAL C:188 , THR C:190 , LEU C:192 , VAL C:193 , 3HR C:303 , AAE C:304 , HOH C:404 , HOH C:406 , HOH C:461	BINDING SITE FOR RESIDUE NAD C 301
14	BC5	SOFTWARE	GLY C:11 , THR C:13 , SER C:14 , GLY C:15 , ILE C:16 , PHE C:36 , ASP C:63 , LEU C:64 , ASN C:90 , ALA C:91 , GLY C:92 , LEU C:113 , ALA C:141 , SER C:142 , TYR C:155 , LYS C:159 , PRO C:185 , GLY C:186 , TRP C:187 , VAL C:188 , THR C:190 , LEU C:192 , VAL C:193 , 3HR C:303 , AAE C:304 , HOH C:404 , HOH C:406 , HOH C:461	BINDING SITE FOR RESIDUE NAI C 302
15	BC6	SOFTWARE	GLN C:94 , SER C:142 , HIS C:144 , LYS C:152 , TYR C:155 , GLN C:196 , NAD C:301 , NAI C:302	BINDING SITE FOR RESIDUE 3HR C 303
16	BC7	SOFTWARE	GLN C:94 , SER C:142 , HIS C:144 , LYS C:152 , TYR C:155 , GLY C:186 , GLN C:196 , NAD C:301 , NAI C:302	BINDING SITE FOR RESIDUE AAE C 304
17	BC8	SOFTWARE	VAL D:150 , LYS D:219	BINDING SITE FOR RESIDUE CL D 301
18	BC9	SOFTWARE	GLY D:11 , SER D:12 , THR D:13 , SER D:14 , GLY D:15 , ILE D:16 , PHE D:36 , ASP D:63 , LEU D:64 , ASN D:90 , ALA D:91 , GLY D:92 , LEU D:113 , ALA D:141 , SER D:142 , TYR D:155 , LYS D:159 , PRO D:185 , GLY D:186 , TRP D:187 , VAL D:188 , THR D:190 , LEU D:192 , VAL D:193 , 3HR D:304 , AAE D:305	BINDING SITE FOR RESIDUE NAD D 302
19	CC1	SOFTWARE	GLY D:11 , THR D:13 , SER D:14 , GLY D:15 , ILE D:16 , PHE D:36 , ASP D:63 , LEU D:64 , ASN D:90 , ALA D:91 , GLY D:92 , LEU D:113 , ALA D:141 , SER D:142 , TYR D:155 , LYS D:159 , PRO D:185 , GLY D:186 , TRP D:187 , VAL D:188 , THR D:190 , LEU D:192 , VAL D:193 , 3HR D:304 , AAE D:305	BINDING SITE FOR RESIDUE NAI D 303
20	CC2	SOFTWARE	GLN D:94 , SER D:142 , HIS D:144 , LYS D:152 , TYR D:155 , GLN D:196 , TRP D:257 , NAD D:302 , NAI D:303	BINDING SITE FOR RESIDUE 3HR D 304
21	CC3	SOFTWARE	GLN D:94 , SER D:142 , HIS D:144 , LYS D:152 , TYR D:155 , TRP D:187 , GLN D:196 , TRP D:257 , NAD D:302 , NAI D:303	BINDING SITE FOR RESIDUE AAE D 305

(no "SS Bond" information available for 3VDR)

(no "Cis Peptide Bond" information available for 3VDR)

(no "SAP(SNP)/Variant" information available for 3VDR)

(no "PROSITE Motif" information available for 3VDR)

(no "Exon" information available for 3VDR)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:260
 aligned with D0VWQ0_ALCFA | D0VWQ0 from UniProtKB/TrEMBL  Length:260

    Alignment length:260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
         D0VWQ0_ALCFA     1 MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR 260
               SCOP domains d3vdra_ A: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....hhhhhh...............hhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vdr A   1 MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain B from PDB  Type:PROTEIN  Length:260
 aligned with D0VWQ0_ALCFA | D0VWQ0 from UniProtKB/TrEMBL  Length:260

    Alignment length:260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
         D0VWQ0_ALCFA     1 MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR 260
               SCOP domains d3vdrb_ B: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.....hhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhh.....hhhhhhhhhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhh......hhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....ee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vdr B   1 MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain C from PDB  Type:PROTEIN  Length:260
 aligned with D0VWQ0_ALCFA | D0VWQ0 from UniProtKB/TrEMBL  Length:260

    Alignment length:260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
         D0VWQ0_ALCFA     1 MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR 260
               SCOP domains d3vdrc_ C: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhh...eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vdr C   1 MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain D from PDB  Type:PROTEIN  Length:260
 aligned with D0VWQ0_ALCFA | D0VWQ0 from UniProtKB/TrEMBL  Length:260

    Alignment length:260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
         D0VWQ0_ALCFA     1 MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR 260
               SCOP domains d3vdrd_ D: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....ee....hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vdr D   1 MLKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: automated matches (114)

Alcaligenes faecalis [TaxId: 511] (6)

1a	d3vdra_	A:
1b	d3vdrb_	B:
1c	d3vdrc_	C:
1d	d3vdrd_	D:

(no "CATH Domain" information available for 3VDR, only for superseded entry 3EEW replaced by 3VDR)

(no "Pfam Domain" information available for 3VDR)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (D0VWQ0_ALCFA | D0VWQ0)

molecular function
	GO:0003858	3-hydroxybutyrate dehydrogenase activity	Catalysis of the reaction: (R)-3-hydroxybutanoate + NAD(+) = acetoacetate + H(+) + NADH.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric/Biological Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		3HR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		AAE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		NAI	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
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		BC6	[ RasMol ]	+environment [ RasMol ]
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		CC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3vdr)

Jmol
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Access by PDB/NDB ID
	3vdr
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	D0VWQ0_ALCFA \| D0VWQ0
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	1.1.1.30
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
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Access by UniProt ID/Accession number
	D0VWQ0_ALCFA \| D0VWQ0
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	D0VWQ0_ALCFA \| D0VWQ0	:	2yz7 3vdq 3w8d 3w8e 3w8f 5b4t 5b4u 5b4v

2yz7	D-3-HYDROXYBUTYRATE DEHYDROGENASE IN NATIVE FORM
2zea	STRUCTURE OF HOLO ENZYME WITH SUBSTRATE ANALOGUE
3vdq

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 21)

Sites (21, 21)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0 ; only for superseded entry 3EEW: 1,4)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File