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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THIOFLAVIN-T (THT) BINDING OSPA MUTANT
 
Authors :  M. Biancalana, K. Makabe, A. Koide, S. Koide
Date :  28 Aug 08  (Deposition) - 03 Feb 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Single-Layer Beta-Sheet, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Biancalana, K. Makabe, A. Koide, S. Koide
Molecular Mechanism Of Thioflavin-T Binding To The Surface Of Beta-Rich Peptide Self-Assemblies
J. Mol. Biol. V. 385 1052 2009
PubMed-ID: 19038267  |  Reference-DOI: 10.1016/J.JMB.2008.11.006

(-) Compounds

Molecule 1 - OUTER SURFACE PROTEIN A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: BORRELIA BURGDORFERI
    Organism Taxid: 139

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PG42Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:36 , LYS A:113 , SER A:121 , TYR A:136 , HOH A:451 , HOH A:484BINDING SITE FOR RESIDUE PG4 A 1
2AC2SOFTWARETYR A:159 , TYR A:169 , LYS A:182 , HOH A:576BINDING SITE FOR RESIDUE PG4 A 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3EC5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3EC5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3EC5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3EC5)

(-) Exons   (0, 0)

(no "Exon" information available for 3EC5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
 aligned with D0VWU8_BORBG | D0VWU8 from UniProtKB/TrEMBL  Length:320

    Alignment length:316
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314      
         D0VWU8_BORBG     5 KNSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKSSTYELFNEKGELSLKYITRADKSSTYELFNEKGELSLKYITRADKSSTYELFNEKGELSEKKITRADKSSTYELFNEKGELSLKYITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK 320
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeeeee........eeeeeee..eeeeeee......eeeeee.....eeeeee.....eeeeeee......eeeeeeee....eeeeee.....eeeeeee.....eeeeee.....eeeeeee.....eeeeee.....eeeeeee.....eeeeee.....eeeeeee.....eeeee.......eeeeee....eeeeee....eeeeeee..eeeeeee.....eeeeeee........eeeeee....eeeeee..eeeeeeee.....eeeee............ee..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ec5 A  27 KNSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKSSTYELFNEKGELSLKYITRADKSSTYELFNEKGELSLKYITRADKSSTYELFNEKGELSEKKITRADKSSTYELFNEKGELSLKYITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK 342
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3EC5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3EC5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3EC5)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (D0VWU8_BORBG | D0VWU8)
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D0VWU8_BORBG | D0VWU8: 2hkd
UniProtKB/TrEMBL
        D0VWU8_BORBG | D0VWU8: 2oy8

(-) Related Entries Specified in the PDB File

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