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(-) Description

Title :  CRYSTAL STRUCTURE OF D-RIBOSE HIGH-AFFINITY TRANSPORT SYSTEM FROM SALMONELLA TYPHIMURIUM LT2
 
Authors :  B. Nocek, N. Maltseva, M. Gu, A. Joachimiak, W. Anderson, Center For S Genomics Of Infectious Diseases (Csgid)
Date :  18 Aug 08  (Deposition) - 26 Aug 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1:  A,B,C,D,E  (2x)
Biol. Unit 2:  F,G,H,I,J,K,L,M,N,O  (1x)
Keywords :  D-Ribose Transport System, Rbsd, Csgid, Structural Genomics, Niaid Structural Genomics Centers For Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, N. Maltseva, M. Gu, A. Joachimiak, W. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of D-Ribose High-Affinity Transport Syste From Salmonella Typhimurium Lt2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - D-RIBOSE HIGH-AFFINITY TRANSPORT SYSTEM
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Vector Type: PLASMID
    Gene: RBSD, STM3881
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 602

 Structural Features

(-) Chains, Units

  123456789101112131415
Asymmetric Unit : ABCDEFGHIJKLMNO
Biological Unit 1 (2x): ABCDE          
Biological Unit 2 (1x):      FGHIJKLMNO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 73)

Asymmetric Unit (2, 73)
No.NameCountTypeFull Name
1EDO13Ligand/Ion1,2-ETHANEDIOL
2MSE60Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 50)
No.NameCountTypeFull Name
1EDO10Ligand/Ion1,2-ETHANEDIOL
2MSE40Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 48)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2MSE40Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:-1 , ASP A:28 , GLY A:30 , LEU A:31 , TYR A:128 , PHE B:139BINDING SITE FOR RESIDUE EDO A 300
02AC2SOFTWAREASP B:28 , GLY B:30 , LEU B:31 , TYR B:128 , PHE C:139BINDING SITE FOR RESIDUE EDO B 300
03AC3SOFTWAREASP C:28 , GLY C:30 , LEU C:31 , TYR C:128 , PHE D:139BINDING SITE FOR RESIDUE EDO C 300
04AC4SOFTWAREASP D:28 , LEU D:31 , TYR D:128 , ASN D:130BINDING SITE FOR RESIDUE EDO D 300
05AC5SOFTWAREASP E:28 , GLY E:30 , LEU E:31 , TYR E:128BINDING SITE FOR RESIDUE EDO E 300
06AC6SOFTWAREASP F:28 , HIS F:106 , TYR F:128 , HOH F:303BINDING SITE FOR RESIDUE EDO F 300
07AC7SOFTWAREASP G:28 , GLY G:30 , LEU G:31 , TYR G:128 , ASN G:130 , ASN O:-1BINDING SITE FOR RESIDUE EDO G 300
08AC8SOFTWAREASP H:28 , LEU H:31 , TYR H:128 , ASN H:130BINDING SITE FOR RESIDUE EDO H 300
09AC9SOFTWAREASP J:28 , LEU J:31 , ASN J:130BINDING SITE FOR RESIDUE EDO J 300
10BC1SOFTWAREASP K:28 , LEU K:31 , TYR K:128 , ASN K:130BINDING SITE FOR RESIDUE EDO K 300
11BC2SOFTWAREASP L:28 , GLY L:30 , LEU L:31 , TYR L:128BINDING SITE FOR RESIDUE EDO L 300
12BC3SOFTWAREASP N:28 , HIS N:106 , TYR N:128BINDING SITE FOR RESIDUE EDO N 300
13BC4SOFTWAREHIS K:20 , ASP O:28 , ASN O:130BINDING SITE FOR RESIDUE EDO O 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E7N)

(-) Cis Peptide Bonds  (15, 15)

Asymmetric Unit
No.Residues
1Val A:48 -Pro A:49
2Val B:48 -Pro B:49
3Val C:48 -Pro C:49
4Val D:48 -Pro D:49
5Val E:48 -Pro E:49
6Val F:48 -Pro F:49
7Val G:48 -Pro G:49
8Val H:48 -Pro H:49
9Val I:48 -Pro I:49
10Val J:48 -Pro J:49
11Val K:48 -Pro K:49
12Val L:48 -Pro L:49
13Val M:48 -Pro M:49
14Val N:48 -Pro N:49
15Val O:48 -Pro O:49

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E7N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3E7N)

(-) Exons   (0, 0)

(no "Exon" information available for 3E7N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7na_ A: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n A  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              |                                       42-MSE    52-MSE    62-MSE                                                                        
                              1-MSE                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:141
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:141
                              1                                                                                                                                          
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138 
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVTF 139
               SCOP domains d3e7nb_ B: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n B  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVTF 139
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138 
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                         


Chain C from PDB  Type:PROTEIN  Length:141
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:141
                              1                                                                                                                                          
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138 
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVTF 139
               SCOP domains d3e7nc_ C: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n C  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVTF 139
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138 
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                         


Chain D from PDB  Type:PROTEIN  Length:141
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:141
                              1                                                                                                                                          
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138 
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVTF 139
               SCOP domains d3e7nd_ D: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhh.....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n D  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVTF 139
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138 
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                         


Chain E from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7ne_ E: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n E  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                        


Chain F from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7nf_ F: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhh.....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n F  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                        


Chain G from PDB  Type:PROTEIN  Length:139
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:139
                              1                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128         
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGV 137
               SCOP domains d3e7ng_ G: automated matches                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n G  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGV 137
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128         
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                       


Chain H from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7nh_ H: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n H  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                        


Chain I from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7ni_ I: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhh.....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n I  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                        


Chain J from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7nj_ J: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n J  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                        


Chain K from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7nk_ K: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh......eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n K  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                        


Chain L from PDB  Type:PROTEIN  Length:139
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:139
                              1                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128         
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGV 137
               SCOP domains d3e7nl_ L: automated matches                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhh.....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n L  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGV 137
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128         
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                       


Chain M from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7nm_ M: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh....eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n M  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                        


Chain N from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7nn_ N: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh......eeeee..........eeee........hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n N  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              1-MSE                                   42-MSE    52-MSE    62-MSE                                                                        


Chain O from PDB  Type:PROTEIN  Length:140
 aligned with RBSD_SALTY | Q8ZKW0 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:140
                              1                                                                                                                                         
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138
           RBSD_SALTY     - --MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
               SCOP domains d3e7no_ O: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh......eeeee..........eeee........hhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...eeee.........eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e7n O  -1 NAmKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDmALTQGVPSFmQVVDVVTREmQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT 138
                              |      8        18        28        38   |    48   |    58   |    68        78        88        98       108       118       128       138
                              1-MSE                                   42-MSE    52-MSE    62-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 15)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3E7N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E7N)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O   (RBSD_SALTY | Q8ZKW0)
molecular function
    GO:0016872    intramolecular lyase activity    The catalysis of certain rearrangements of a molecule to break or form a ring.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0048029    monosaccharide binding    Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
biological process
    GO:0019303    D-ribose catabolic process    The chemical reactions and pathways resulting in the breakdown of D-ribose (ribo-pentose).
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0005996    monosaccharide metabolic process    The chemical reactions and pathways involving monosaccharides, the simplest carbohydrates. They are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3e7n
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3dsa RELATED ID: IDP00079 RELATED DB: TARGETDB