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(-) Description

Title :  CRYSTAL STRUCTURE OF TRMH FAMILY RNA METHYLTRANSFERASE FROM BURKHOLDERIA PSEUDOMALLEI
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Date :  14 Aug 08  (Deposition) - 26 Aug 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ssgcid, Protein Knot, Decode, Rna Methyltransferase, Methyltransferase, Transferase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Crystal Structure Of Trmh Family Rna Methyltransferase From Burkholderia Pseudomallei
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRMH FAMILY RNA METHYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Vector Type: AVA0421
    Gene: BURPS305_4843
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI 305
    Organism Taxid: 425067
    Synonym: RNA METHYLTRANSFERASE, TRMH FAMILY, GROUP 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3E5Y)

(-) Sites  (0, 0)

(no "Site" information available for 3E5Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E5Y)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:129 -Asn A:130
2Glu B:33 -Pro B:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E5Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3E5Y)

(-) Exons   (0, 0)

(no "Exon" information available for 3E5Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
 aligned with A0A0E1SBH3_B | A0A0E1SBH3 from UniProtKB/TrEMBL  Length:179

    Alignment length:156
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173      
         A0A0E1SBH3_B    24 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFEGGA 179
               SCOP domains d3e5ya_ A: automated matches                                                                                                                                 SCOP domains
               CATH domains 3e5yA00 A:1-156  [code=3.40.1280.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhhh.eeeee.......hhhhhhhh..hhhhhhh.eee.hhhhhhhhhh.hhh.eeee.....ee.hhh......eeeee......hhhhhhhhhhh.eee..........hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e5y A   1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFEGGA 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      


Chain B from PDB  Type:PROTEIN  Length:141
 aligned with A0A0E1SBH3_B | A0A0E1SBH3 from UniProtKB/TrEMBL  Length:179

    Alignment length:156
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173      
         A0A0E1SBH3_B    24 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFEGGA 179
               SCOP domains d3e5yb_ B: automated matches                                                                                                                                 SCOP domains
               CATH domains 3e5yB00 B:1-156  [code=3.40.1280.10, no                name defined]                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhhh.eeeee........---------------.eeee.hhhhhhhhhh.hhh.eeee.....ee.hhh......eeeee......hhhhhhhhhhh.eee..........hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e5y B   1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLD---------------QMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFEGGA 156
                                    10        20        30        40         -     |  60        70        80        90       100       110       120       130       140       150      
                                                                  40              56
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E5Y)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Glu B:33 - Pro B:34   [ RasMol ]  
    Gly A:129 - Asn A:130   [ RasMol ]  
 

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