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(-) Description

Title :  CRYSTAL STRUCTURE OF BA2930- A PUTATIVE AMINOGLYCOSIDE N3-ACETYLTRANSFERASE FROM BACILLUS ANTHRACIS
 
Authors :  M. M. Klimecka, M. Chruszcz, T. Skarina, O. Onopryienko, M. Cymborowsk A. Savchenko, A. Edwards, W. Anderson, W. Minor, Center For Structu Genomics Of Infectious Diseases (Csgid)
Date :  11 Aug 08  (Deposition) - 19 Aug 08  (Release) - 03 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  N3-Acetyltransferase, Bacillus Anthracis, Antrax, Transferase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. M. Klimecka, M. Chruszcz, J. Font, T. Skarina, I. Shumilin, O. Onopryienko, P. J. Porebski, M. Cymborowski, M. D. Zimmerman, J. Hasseman, I. J. Glomski, L. Lebioda, A. Savchenko, A. Edwards, W. Minor
Structural Analysis Of A Putative Aminoglycoside N-Acetyltransferase From Bacillus Anthracis.
J. Mol. Biol. V. 410 411 2011
PubMed-ID: 21601576  |  Reference-DOI: 10.1016/J.JMB.2011.04.076

(-) Compounds

Molecule 1 - AMINOGLYCOSIDE N3-ACETYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AACC7, BA_2930, GBAA2930
    Organism Common: ANTHRAX,ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Strain: AMES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric/Biological Unit (2, 20)
No.NameCountTypeFull Name
1CIT4Ligand/IonCITRIC ACID
2MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:148 , LEU A:149 , SER A:150 , HOH A:398 , HOH A:405 , HOH A:452BINDING SITE FOR RESIDUE CIT A 266
2AC2SOFTWARESER A:36 , SER A:37 , LEU A:38 , SER A:39 , ALA A:109 , GLY A:111 , LYS A:112 , HOH A:425BINDING SITE FOR RESIDUE CIT A 267
3AC3SOFTWAREGLU A:193 , SER B:148 , LEU B:149 , SER B:150BINDING SITE FOR RESIDUE CIT B 266
4AC4SOFTWARESER B:37 , LEU B:38 , SER B:39 , GLY B:111 , LYS B:112BINDING SITE FOR RESIDUE CIT B 267

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E4F)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:82 -Pro A:83
2Arg B:82 -Pro B:83

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E4F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3E4F)

(-) Exons   (0, 0)

(no "Exon" information available for 3E4F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
 aligned with Q6HXF8_BACAN | Q6HXF8 from UniProtKB/TrEMBL  Length:267

    Alignment length:262
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264  
         Q6HXF8_BACAN     5 DIVASTQLPNTIKTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPTQSSDLSDPKHWSRPPVPEEWWQIIRDNVPAFEPHITPTRAMGKVVECFRTYPNVVRSNHPLGSFAAWGRHAEEITVNQSLSMSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSGACELIKVGAPIIENGERVWKEFVDMDYDSDKFVEIGVEFEQKGTVTMGKIGNAKCRLMKQRDIVDFGTEWFRKK 266
               SCOP domains d3e4fa_ A: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh.....eeeeee.hhhhh....hhhhhhhhhhhhhh...eeeee..hhhhhhhhhh.....hhhhhhhhhhhh.............hhhhhhhh.....ee.......eeeee.hhhhhhh...........hhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhhhh....eeeee..eeeeeeehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e4f A   3 DIVASTQLPNTIKTITNDLRKLGLKKGmTVIVHSSLSSIGWISGGAVAVVEALmEVITEEGTIImPTQSSDLSDPKHWSRPPVPEEWWQIIRDNVPAFEPHITPTRAmGKVVECFRTYPNVVRSNHPLGSFAAWGRHAEEITVNQSLSmSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSGACELIKVGAPIIENGERVWKEFVDmDYDSDKFVEIGVEFEQKGTVTmGKIGNAKCRLmKQRDIVDFGTEWFRKK 264
                                    12        22       |32        42        52   |    62    |   72        82        92       102       112       122       132       142       152       162       172       182       192       202       212  |    222       232    |  242     | 252       262  
                                                      30-MSE                    56-MSE     67-MSE                                    110-MSE                                  151-MSE                                                         215-MSE               237-MSE    248-MSE            


Chain A from PDB  Type:PROTEIN  Length:262
 aligned with Q81P86_BACAN | Q81P86 from UniProtKB/TrEMBL  Length:265

    Alignment length:262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  
         Q81P86_BACAN     3 DIVASTQLPNTIKTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPTQSSDLSDPKHWSRPPVPEEWWQIIRDNVPAFEPHITPTRAMGKVVECFRTYPNVVRSNHPLGSFAAWGRHAEEITVNQSLSMSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSGACELIKVGAPIIENGERVWKEFVDMDYDSDKFVEIGVEFEQKGTVTMGKIGNAKCRLMKQRDIVDFGTEWFRKK 264
               SCOP domains d3e4fa_ A: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh.....eeeeee.hhhhh....hhhhhhhhhhhhhh...eeeee..hhhhhhhhhh.....hhhhhhhhhhhh.............hhhhhhhh.....ee.......eeeee.hhhhhhh...........hhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhhhh....eeeee..eeeeeeehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e4f A   3 DIVASTQLPNTIKTITNDLRKLGLKKGmTVIVHSSLSSIGWISGGAVAVVEALmEVITEEGTIImPTQSSDLSDPKHWSRPPVPEEWWQIIRDNVPAFEPHITPTRAmGKVVECFRTYPNVVRSNHPLGSFAAWGRHAEEITVNQSLSmSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSGACELIKVGAPIIENGERVWKEFVDmDYDSDKFVEIGVEFEQKGTVTmGKIGNAKCRLmKQRDIVDFGTEWFRKK 264
                                    12        22       |32        42        52   |    62    |   72        82        92       102       112       122       132       142       152       162       172       182       192       202       212  |    222       232    |  242     | 252       262  
                                                      30-MSE                    56-MSE     67-MSE                                    110-MSE                                  151-MSE                                                         215-MSE               237-MSE    248-MSE            


Chain B from PDB  Type:PROTEIN  Length:261
 aligned with Q6HXF8_BACAN | Q6HXF8 from UniProtKB/TrEMBL  Length:267

    Alignment length:261
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265 
         Q6HXF8_BACAN     6 IVASTQLPNTIKTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPTQSSDLSDPKHWSRPPVPEEWWQIIRDNVPAFEPHITPTRAMGKVVECFRTYPNVVRSNHPLGSFAAWGRHAEEITVNQSLSMSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSGACELIKVGAPIIENGERVWKEFVDMDYDSDKFVEIGVEFEQKGTVTMGKIGNAKCRLMKQRDIVDFGTEWFRKK 266
               SCOP domains d3e4fb_ B: automated matches                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhh.....eeeeeehhhhhh...hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhh.......hhhhhhhhhh.............hhhhhhhh.....ee.......eeeee.hhhhhhh...........hhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhhh.....eeeee..eeeeeeehhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e4f B   4 IVASTQLPNTIKTITNDLRKLGLKKGmTVIVHSSLSSIGWISGGAVAVVEALmEVITEEGTIImPTQSSDLSDPKHWSRPPVPEEWWQIIRDNVPAFEPHITPTRAmGKVVECFRTYPNVVRSNHPLGSFAAWGRHAEEITVNQSLSmSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSGACELIKVGAPIIENGERVWKEFVDmDYDSDKFVEIGVEFEQKGTVTmGKIGNAKCRLmKQRDIVDFGTEWFRKK 264
                                    13        23      | 33        43        53  |     63   |    73        83        93       103      |113       123       133       143       153       163       173       183       193       203       213 |     223       233   |   243    |  253       263 
                                                     30-MSE                    56-MSE     67-MSE                                    110-MSE                                  151-MSE                                                         215-MSE               237-MSE    248-MSE            


Chain B from PDB  Type:PROTEIN  Length:261
 aligned with Q81P86_BACAN | Q81P86 from UniProtKB/TrEMBL  Length:265

    Alignment length:261
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263 
         Q81P86_BACAN     4 IVASTQLPNTIKTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPTQSSDLSDPKHWSRPPVPEEWWQIIRDNVPAFEPHITPTRAMGKVVECFRTYPNVVRSNHPLGSFAAWGRHAEEITVNQSLSMSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSGACELIKVGAPIIENGERVWKEFVDMDYDSDKFVEIGVEFEQKGTVTMGKIGNAKCRLMKQRDIVDFGTEWFRKK 264
               SCOP domains d3e4fb_ B: automated matches                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhh.....eeeeeehhhhhh...hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhh.......hhhhhhhhhh.............hhhhhhhh.....ee.......eeeee.hhhhhhh...........hhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhhh.....eeeee..eeeeeeehhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e4f B   4 IVASTQLPNTIKTITNDLRKLGLKKGmTVIVHSSLSSIGWISGGAVAVVEALmEVITEEGTIImPTQSSDLSDPKHWSRPPVPEEWWQIIRDNVPAFEPHITPTRAmGKVVECFRTYPNVVRSNHPLGSFAAWGRHAEEITVNQSLSmSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSGACELIKVGAPIIENGERVWKEFVDmDYDSDKFVEIGVEFEQKGTVTmGKIGNAKCRLmKQRDIVDFGTEWFRKK 264
                                    13        23      | 33        43        53  |     63   |    73        83        93       103      |113       123       133       143       153       163       173       183       193       203       213 |     223       233   |   243    |  253       263 
                                                     30-MSE                    56-MSE     67-MSE                                    110-MSE                                  151-MSE                                                         215-MSE               237-MSE    248-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3E4F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E4F)

(-) Gene Ontology  (4, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q81P86_BACAN | Q81P86)
molecular function
    GO:0046353    aminoglycoside 3-N-acetyltransferase activity    Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 3-N-acetylaminoglycoside. This is acetylation of the 3-amino group of the central deoxystreptamine ring.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

Chain A,B   (Q6HXF8_BACAN | Q6HXF8)
molecular function
    GO:0046353    aminoglycoside 3-N-acetyltransferase activity    Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 3-N-acetylaminoglycoside. This is acetylation of the 3-amino group of the central deoxystreptamine ring.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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  3e4f
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q81P86_BACAN | Q81P86: 3kzl
UniProtKB/TrEMBL
        Q6HXF8_BACAN | Q6HXF8: 3kzl
        Q81P86_BACAN | Q81P86: 3ijw 3n0m 3n0s 3slb 3slf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3E4F)