3E27 - JenaLib

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Title :   NICOTINIC ACID MONONUCLEOTIDE (NAMN) ADENYLYLTRANSFERASE FROM BACILLUS ANTHRACIS: PRODUCT COMPLEX

Authors :   D. Martynowski, Y. Eyobo, H. Zhang

Date :   05 Aug 08 (Deposition) - 09 Sep 08 (Release) - 11 Jun 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Rossman-Like Fold, Nucleotide-Binding Motif, Nucleotidyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Sorci, Y. Pan, Y. Eyobo, I. Rodionova, N. Huang, O. Kurnasov, S. Zhong, A. D. Mackerell, H. Zhang, A. L. Osterman
Targeting Nad Biosynthesis In Bacterial Pathogens: Structure-Based Development Of Inhibitors Of Nicotinate Mononucleotide Adenylyltransferase Nadd.
Chem. Biol. V. 16 849 2009
PubMed-ID: 19716475 | Reference-DOI: 10.1016/J.CHEMBIOL.2009.07.006

Molecule 1 - NICOTINATE (NICOTINAMIDE) NUCLEOTIDE ADENYLYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.7.7.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	A PET DERIVED VECTOR
	Expression System Strain	:	E. COLI BL21/DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NADD, BT9727_4068
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	1392
	Strain	:	B. ANTHRACIS AMES

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	DND	4	Ligand/Ion	NICOTINIC ACID ADENINE DINUCLEOTIDE
2	MG	4	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	DND	2	Ligand/Ion	NICOTINIC ACID ADENINE DINUCLEOTIDE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	DND	2	Ligand/Ion	NICOTINIC ACID ADENINE DINUCLEOTIDE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:8 , GLY A:9 , THR A:10 , PHE A:11 , HIS A:15 , HIS A:18 , ILE A:21 , ASN A:39 , PRO A:43 , HIS A:44 , LYS A:45 , TYR A:84 , THR A:85 , ILE A:105 , GLY A:106 , ASP A:108 , MET A:109 , TRP A:116 , TYR A:117 , ARG A:133 , PHE A:152 , VAL A:154 , MG A:190 , HOH A:192 , HOH A:207 , HOH A:228 , HOH A:230 , HOH A:246 , HOH A:247 , HOH A:252 , HOH A:254	BINDING SITE FOR RESIDUE DND A 191
2	AC2	SOFTWARE	ASP A:108 , ARG A:133 , DND A:191	BINDING SITE FOR RESIDUE MG A 190
3	AC3	SOFTWARE	GLY B:8 , GLY B:9 , THR B:10 , PHE B:11 , HIS B:15 , HIS B:18 , ILE B:21 , ASN B:39 , PRO B:43 , HIS B:44 , LYS B:45 , TYR B:84 , THR B:85 , ILE B:105 , GLY B:106 , ASP B:108 , TRP B:116 , TYR B:117 , ARG B:133 , PHE B:152 , VAL B:154 , MG B:190 , HOH B:193 , HOH B:247 , HOH B:256 , HOH B:266 , HOH B:271 , HOH B:294 , HOH B:297	BINDING SITE FOR RESIDUE DND B 191
4	AC4	SOFTWARE	ASP B:108 , ARG B:133 , DND B:191 , HOH B:294	BINDING SITE FOR RESIDUE MG B 190
5	AC5	SOFTWARE	GLY C:8 , GLY C:9 , THR C:10 , PHE C:11 , HIS C:15 , HIS C:18 , ILE C:21 , ASN C:39 , PRO C:43 , HIS C:44 , LYS C:45 , TYR C:84 , THR C:85 , ILE C:105 , GLY C:106 , ASP C:108 , MET C:109 , TRP C:116 , TYR C:117 , ARG C:133 , PHE C:152 , VAL C:154 , MG C:190 , HOH C:192 , HOH C:240 , HOH C:250 , HOH C:260 , HOH C:262 , HOH C:264 , HOH C:279 , HOH C:287	BINDING SITE FOR RESIDUE DND C 191
6	AC6	SOFTWARE	ASP C:108 , ARG C:133 , DND C:191 , HOH C:256	BINDING SITE FOR RESIDUE MG C 190
7	AC7	SOFTWARE	GLY D:8 , GLY D:9 , THR D:10 , PHE D:11 , HIS D:15 , HIS D:18 , ILE D:21 , ASN D:39 , PRO D:43 , HIS D:44 , LYS D:45 , TYR D:84 , THR D:85 , ILE D:105 , GLY D:106 , ASP D:108 , MET D:109 , TRP D:116 , TYR D:117 , ARG D:133 , PHE D:152 , VAL D:154 , MG D:190 , HOH D:227 , HOH D:244 , HOH D:254 , HOH D:265 , HOH D:272 , HOH D:295	BINDING SITE FOR RESIDUE DND D 191
8	AC8	SOFTWARE	ASP D:108 , ARG D:133 , DND D:191 , HOH D:297	BINDING SITE FOR RESIDUE MG D 190

(no "SS Bond" information available for 3E27)

Asymmetric Unit

No.	Residues
1	Asp A:12	-	Pro A:13
2	Asp B:12	-	Pro B:13
3	Asp C:12	-	Pro C:13
4	Asp D:12	-	Pro D:13

(no "SAP(SNP)/Variant" information available for 3E27)

(no "PROSITE Motif" information available for 3E27)

(no "Exon" information available for 3E27)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains d3e27a_ A: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhh...eeeeee.............hhhhhhhhhhhhhh....eee.hhhhh.....hhhhhhhhhhhhh...eeeeeeehhhhhhhhhh.hhhhhhhhheeeee.............eee.......hhhhhhhhhhh........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e27 A   2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRDITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES 189
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain B from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains d3e27b_ B: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhh...eeeeee.............hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhh...eeeeeeehhhhhhhhhh.hhhhhh...eeeee.............eee.......hhhhhhhhhhh........hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e27 B   1 MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRDITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE 188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain C from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains d3e27c_ C: automated matches                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhh...eeeeee.............hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhh...eeeeeeehhhhhhhhhh.hhhhhhh..eeeee.............eee.......hhhhhhhhhhh........hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e27 C   1 MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRDITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES 189
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain D from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains d3e27d_ D: automated matches                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhh..eeeeee.............hhhhhhhhhhhhhh....eee.hhhhhh....hhhhhhhhhhhhh...eeeeeeehhhhhhhhhh.hhhhhhhhheeeee.............ee........hhhhhhhhhhh........hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e27 D   2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRDITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE 188
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Adenine nucleotide alpha hydrolase-like (440)

Superfamily: Nucleotidylyl transferase (325)

Family: Adenylyltransferase (56)

Protein domain: automated matches (7)

Anthrax bacillus (Bacillus anthracis) [TaxId: 1392] (5)

1a	d3e27a_	A:
1b	d3e27b_	B:
1c	d3e27c_	C:
1d	d3e27d_	D:

(no "CATH Domain" information available for 3E27)

(no "Pfam Domain" information available for 3E27)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3E27)

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	Cis Peptide Bonds
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		Asp C:12 - Pro C:13	[ RasMol ]
		Asp D:12 - Pro D:13	[ RasMol ]

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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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