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(-) Description

Title :  CRYSTAL STRUCTURE OF S.POMBE ERF1/ERF3 COMPLEX
 
Authors :  Z. Cheng, M. Lim, C. Kong, H. Song
Date :  05 Aug 08  (Deposition) - 19 May 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,C,D,E,H,J,K
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,H  (1x)
Biol. Unit 4:  J,K  (1x)
Keywords :  Sup35, Sup45, Translation Termination, Peptide Release, Gtp-Binding, Nucleotide-Binding, Phosphoprotein, Protein Biosynthesis, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Cheng, K. Saito, A. V. Pisarev, M. Wada, V. P. Pisareva, T. V. Pestova M. Gajda, A. Round, C. Kong, M. Lim, Y. Nakamura, D. I. Svergun, K. Ito, H. Song
Structural Insights Into Erf3 And Stop Codon Recognition By Erf1
Genes Dev. V. 23 1106 2009
PubMed-ID: 19417105  |  Reference-DOI: 10.1101/GAD.1770109

(-) Compounds

Molecule 1 - EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT
    Chains: A, D, E, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL-21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 467-662
    Gene: SUP35, SPCC584.04
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
    Synonym: ERF2, ERF-3, ERF3, TRANSLATION RELEASE FACTOR 3, POLYPEPTIDE RELEASE FACTOR 3, SUP35
 
Molecule 2 - EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
    Chains: C, B, H, K
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: BL-21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SUP45, SPAC1834.01
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
    Synonym: EUKARYOTIC RELEASE FACTOR 1, ERF1, SUP45

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEHJK
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EH  
Biological Unit 4 (1x):       JK

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3E20)

(-) Sites  (0, 0)

(no "Site" information available for 3E20)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E20)

(-) Cis Peptide Bonds  (26, 26)

Asymmetric Unit
No.Residues
1Met A:502 -Pro A:503
2Cys C:299 -Phe C:300
3Ala C:386 -Asn C:387
4Met C:420 -Leu C:421
5Pro C:423 -Glu C:424
6Ser C:425 -Asp C:426
7Met D:502 -Pro D:503
8Cys B:299 -Phe B:300
9Ala B:386 -Asn B:387
10Met B:420 -Leu B:421
11Pro B:423 -Glu B:424
12Ser B:425 -Asp B:426
13Met E:502 -Pro E:503
14Cys H:299 -Phe H:300
15Ala H:386 -Asn H:387
16Met H:420 -Leu H:421
17Pro H:423 -Glu H:424
18Ser H:425 -Asp H:426
19Met J:502 -Pro J:503
20Lys J:607 -Lys J:608
21Cys K:299 -Phe K:300
22Phe K:300 -Gly K:301
23Ala K:386 -Asn K:387
24Met K:420 -Leu K:421
25Pro K:423 -Glu K:424
26Ser K:425 -Asp K:426

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E20)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3E20)

(-) Exons   (0, 0)

(no "Exon" information available for 3E20)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
 aligned with ERF3_SCHPO | O74718 from UniProtKB/Swiss-Prot  Length:662

    Alignment length:196
                                   476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      
           ERF3_SCHPO   467 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e20A01 A:467-554 Translation factors                                                   3e20A02 A:555-662 Translation factors                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eeeeee.....ee..eeeeee...eeeeeeeee.....ee.ee....eeeeeee..........eeee......eeeeeeeeeee...........eeeee....eeeeeeeeeeeee..................eeeeeeeeeeeee......hhhhheeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e20 A 467 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
                                   476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      


Chain B from PDB  Type:PROTEIN  Length:261
 aligned with ERF1_SCHPO | P79063 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:424
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423    
           ERF1_SCHPO     4 TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESDE 427
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh........eeeee.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..........eeeeeee.hhhhh.eeeeeee.........eeeee......hhhhhh----------------------------------------------------------------------------------------------------------------------------------------hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh....eeeee.....ee.----------..ee.........-----------------..eehhhhhhhhhhhhh..eeee...hhhhhhhhhh...eeee................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e20 B   4 TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELL----------------------------------------------------------------------------------------------------------------------------------------NVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRY----------ITYMTKEQEEKDS-----------------SSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESDE 427
                                    13        23        33        43        53        63        73        83        93       103       113       123       133   |     -         -         -         -         -         -         -         -         -         -         -         -         -         -|      283       293       303       313       323    |    -     | 343       | -         -     | 373       383       393       403       413       423    
                                                                                                                                                               137                                                                                                                                      274                                                   328        339         351               369                                                          


Chain C from PDB  Type:PROTEIN  Length:261
 aligned with ERF1_SCHPO | P79063 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:424
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423    
           ERF1_SCHPO     4 TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESDE 427
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------                                                                                                                                        -3e20C02 C:275-427  [code=3.30.1330.30, no name defined          ]                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh........eeeee.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..........eeeeeee.hhhhh.eeeeeee.........eeeee......hhhhhh----------------------------------------------------------------------------------------------------------------------------------------hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh....eeeee.....ee.----------..ee.........-----------------..eehhhhhhhhhhhhh..eeee...hhhhhhhhhh...eeee................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e20 C   4 TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELL----------------------------------------------------------------------------------------------------------------------------------------NVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRY----------ITYMTKEQEEKDS-----------------SSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESDE 427
                                    13        23        33        43        53        63        73        83        93       103       113       123       133   |     -         -         -         -         -         -         -         -         -         -         -         -         -         -|      283       293       303       313       323    |    -     | 343       | -         -     | 373       383       393       403       413       423    
                                                                                                                                                               137                                                                                                                                      274                                                   328        339         351               369                                                          


Chain D from PDB  Type:PROTEIN  Length:196
 aligned with ERF3_SCHPO | O74718 from UniProtKB/Swiss-Prot  Length:662

    Alignment length:196
                                   476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      
           ERF3_SCHPO   467 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e20D01 D:467-554 Translation factors                                                   3e20D02 D:555-662 Translation factors                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eeeeee.....ee..eeeeee...eeeeeeeee.....ee.ee....eeeeeee..........eeee......eeeeeeeeeee...........eeeee....eeeeeeeeeeeee..................eeeeeeeeeeeee......hhhhheeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e20 D 467 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
                                   476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      


Chain E from PDB  Type:PROTEIN  Length:196
 aligned with ERF3_SCHPO | O74718 from UniProtKB/Swiss-Prot  Length:662

    Alignment length:196
                                   476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      
           ERF3_SCHPO   467 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e20E01 E:467-554 Translation factors                                                   3e20E02 E:555-662 Translation factors                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee...eeeeee.....ee...eeeee...eeeeeeeee.....ee.ee....eeeeeee..........eee.......eeeeeeeeeee...........eeeee....eeeeeeeeeeee...................eeeeeeeeeeeee......hhhhheeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e20 E 467 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
                                   476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      


Chain H from PDB  Type:PROTEIN  Length:175
 aligned with ERF1_SCHPO | P79063 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:423
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424   
           ERF1_SCHPO     5 AEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESDE 427
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh-------------.eee.-------........---------------------......---------.eee-----------------..------------------hhhhhh..----------------------------------------------------------------------------------------------------------------------------------------hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeee.....ee.----------..ee.........-----------------..eehhhhhhhhhhhhh..eeee...hhhhhhhhhh...eeeee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e20 H   5 AEKAIEIWKIRRLVK-------------TLIIP-------YSNMLAEE---------------------STRERL---------GLVI-----------------DF------------------TEALAELL----------------------------------------------------------------------------------------------------------------------------------------NVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRY----------ITYMTKEQEEKDS-----------------SSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESDE 427
                                    14    |    -        34  |      -|      | -         -        74    |    -    |  | -         -     ||  -         -     | 134  |      -         -         -         -         -         -         -         -         -         -         -         -         -       274       284       294       304       314       324   |     -    |  344      |  -         -    |  374       384       394       404       414       424   
                                         19            33  37      45     52                    74   79        89 92               110|                130    137                                                                                                                                      274                                                   328        339         351               369                                                          
                                                                                                                                    111                                                                                                                                                                                                                                                                                                                            


Chain J from PDB  Type:PROTEIN  Length:196
 aligned with ERF3_SCHPO | O74718 from UniProtKB/Swiss-Prot  Length:662

    Alignment length:196
                                   476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      
           ERF3_SCHPO   467 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e20J01 J:467-554 Translation factors                                                   3e20J02 J:555-662 Translation factors                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee...eeeeee.....ee...eeeee...eeeeeeeee.....ee.ee....eeeeeee..........eee.......eeeeeeeeeee...........eeeee....eeeeeeeeeeee...................eeeeeeeeeeeee......hhhhheeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e20 J 467 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
                                   476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      


Chain K from PDB  Type:PROTEIN  Length:175
 aligned with ERF1_SCHPO | P79063 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:423
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424   
           ERF1_SCHPO     5 AEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESDE 427
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...-------------..ee.-------........---------------------......---------.ee.-----------------..------------------hhhhh...----------------------------------------------------------------------------------------------------------------------------------------hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeee.....ee.----------..ee.........-----------------..eehhhhhhhhhhhhh..eeee...hhhhhhhhhhhh.eeeee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e20 K   5 AEKAIEIWKIRRLVK-------------TLIIP-------YSNMLAEE---------------------STRERL---------GLVI-----------------DF------------------TEALAELL----------------------------------------------------------------------------------------------------------------------------------------NVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRY----------ITYMTKEQEEKDS-----------------SSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESDE 427
                                    14    |    -        34  |      -|      | -         -        74    |    -    |  | -         -     ||  -         -     | 134  |      -         -         -         -         -         -         -         -         -         -         -         -         -       274       284       294       304       314       324   |     -    |  344      |  -         -    |  374       384       394       404       414       424   
                                         19            33  37      45     52                    74   79        89 92               110|                130    137                                                                                                                                      274                                                   328        339         351               369                                                          
                                                                                                                                    111
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3E20)

(-) CATH Domains  (2, 9)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E20)

(-) Gene Ontology  (13, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,D,E,J   (ERF3_SCHPO | O74718)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0003747    translation release factor activity    Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
biological process
    GO:0002184    cytoplasmic translational termination    The process resulting in the release of a polypeptide chain from the ribosome in the cytoplasm, usually in response to a termination codon.
    GO:0000288    nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay    A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006415    translational termination    The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0018444    translation release factor complex    A heterodimeric complex involved in the release of a nascent polypeptide chain from a ribosome.

Chain B,C,H,K   (ERF1_SCHPO | P79063)
molecular function
    GO:0016149    translation release factor activity, codon specific    A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.
biological process
    GO:0002184    cytoplasmic translational termination    The process resulting in the release of a polypeptide chain from the ribosome in the cytoplasm, usually in response to a termination codon.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006415    translational termination    The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0018444    translation release factor complex    A heterodimeric complex involved in the release of a nascent polypeptide chain from a ribosome.

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  ERF3_SCHPO | O74718
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERF3_SCHPO | O74718: 1r5b 1r5n 1r5o

(-) Related Entries Specified in the PDB File

3e1y CRYSTAL STRUCTURE OF HUMAN ERF1/ERF3 COMPLEX