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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A CONSERVED DOMAIN FROM A PROTEIN OF GEOBACTER SULFURREDUCENS PCA
 
Authors :  K. Tan, L. Bigelow, S. Clancy, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)
Date :  01 Aug 08  (Deposition) - 30 Sep 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apc87688. 2, Conserved Domain, Geobacter Sulfurreducens Pca, Structural Genomics, Psi-2, Midwest Center For Structural Genomics, Mcsg, Protein Structure Initiative, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, L. Bigelow, S. Clancy, A. Joachimiak
The Crystal Structure Of A Conserved Domain From A Protein Of Geobacter Sulfurreducens Pca
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED DOMAIN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Vector Type: PLASMID
    Gene: GSU1116
    Organism Scientific: GEOBACTER SULFURREDUCENS
    Organism Taxid: 35554
    Strain: PCA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2NA2Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:115 , TYR A:117 , ASN A:200 , ASN A:202BINDING SITE FOR RESIDUE NA A 1
2AC2SOFTWAREASN B:115 , TYR B:117 , ASN B:200BINDING SITE FOR RESIDUE NA B 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E0Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3E0Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E0Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3E0Y)

(-) Exons   (0, 0)

(no "Exon" information available for 3E0Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with Q74E48_GEOSL | Q74E48 from UniProtKB/TrEMBL  Length:245

    Alignment length:164
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234    
         Q74E48_GEOSL    75 HLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVSIIANLILTAIKLRQQVASSR 238
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e0yA00 A:75-238  [code=3.30.450.40, no name defined]                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh...hhhhhhhhhhhhhhhhh....eeeeeee..eeeeeeee..hhhhh...eee....hhhhhhhhh..eeeeee......---------.eeeeeeeeee....eeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e0y A  75 HLEIISLEEISmLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGITGSVARDGQYISLSRASQDPRY---------KYNSmLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVSIIANLILTAIKLRQQVASSR 238
                                    84 |      94       104       114       124       134       144       154       164     |   -     | 184       194       204       214       224       234    
                                      86-MSE                                                                             170       180   |                                                      
                                                                                                                                       184-MSE                                                  


Chain B from PDB  Type:PROTEIN  Length:152
 aligned with Q74E48_GEOSL | Q74E48 from UniProtKB/TrEMBL  Length:245

    Alignment length:165
                                    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233     
         Q74E48_GEOSL    74 EHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVSIIANLILTAIKLRQQVASSR 238
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e0yB00 B:74-238  [code=3.30.450.40, no name defined]                                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh...hhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeee..hhhhh...eee...hhhhhhhhhh..eeeee...-------------..eeeeeeeee....eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e0y B  74 EHLEIISLEEISmLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGITGSVARDGQYISLSRASQ-------------KYNSmLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVSIIANLILTAIKLRQQVASSR 238
                                    83  |     93       103       113       123       133       143       153       163  |      -      |183|      193       203       213       223       233     
                                       86-MSE                                                                         166           180   |                                                      
                                                                                                                                        184-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3E0Y)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E0Y)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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