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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE AMINOGLYCOSIDE PHOSPHOTRANSFERASE (REUT_A1007) FROM RALSTONIA EUTROPHA JMP134 AT 2.32 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  24 Jul 08  (Deposition) - 12 Aug 08  (Release) - 23 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.32
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Protein Kinase-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Acyl-Coa Dehydrogenase (Yp_295230. 1) From Ralstonia Eutropha Jmp134 At 2. 32 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ACYL-COA DEHYDROGENASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_295230.1, REUT_A1007
    Organism Common: ALCALIGENES EUTROPHUS
    Organism Scientific: RALSTONIA EUTROPHA JMP134
    Organism Taxid: 264198

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric Unit (4, 20)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION
3EDO1Ligand/Ion1,2-ETHANEDIOL
4MSE17Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 38)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
4MSE34Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:226 , ASP A:241 , HOH A:453 , HOH A:454 , HOH A:455BINDING SITE FOR RESIDUE CA A 359
2AC2SOFTWARETHR A:141 , ASP A:145 , PRO A:282 , LEU A:290BINDING SITE FOR RESIDUE ACT A 360
3AC3SOFTWARELEU A:274 , ASP A:275 , ASN A:304BINDING SITE FOR RESIDUE EDO A 361

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DXP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:38 -Pro A:39

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DXP)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3DXP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:329
 aligned with Q473P7_CUPNJ | Q473P7 from UniProtKB/TrEMBL  Length:358

    Alignment length:340
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358
         Q473P7_CUPNJ    19 RFDTEALEAWMRQHVEGFAGPLSVEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLGHPMGDFGYHCMSWHIAPGQFRGIAGLDHAALGIPDEASYRKLYEQRTGRPITGDWNFYLAFSMFRIAGILQGIMKRVVDGTASSAQALDAGKRARPMAEMGWEYAKKAKQ 358
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.......eeee...-....eeeee....eeeee....----------hhhhhhhhhhhhh........eeeee.........eeeee...............hhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee....hhh.eee......eeee......eeehhhhhhhhhhhhhh............hhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dxp A  19 RFDTEALEAWmRQHVEGFAGPLSVEQFKG-QSNPTFKLVTPGQTYVmRAKPG----------AIEREYRVmDALAGTDVPVAKmYALCEDESVIGRAFYImEFVSGRVLWDQSLPGmSPAERTAIYDEmNRVIAAmHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAmDSLmDWLPQHIPQEDADLTSIVHGDYRLDNLmFHPTEPRVLAVLDWELSTLGHPmGDFGYHCmSWHIAPGQFRGIAGLDHAALGIPDEASYRKLYEQRTGRPITGDWNFYLAFSmFRIAGILQGImKRVVDGTASSAQALDAGKRARPmAEmGWEYAKKAKQ 358
                                    28|       38        |-|       58      | 68 |       -  |     88|       98   |   108       118|      128      |138       148     | 158       168       178       188       198 |     208       218       228       238       248  |    258|      268       278       288       298       308  |    318   |   328       338      |348       358
                                     29-MSE            47 |              65-MSE0         81      89-MSE      102-MSE          119-MSE         135-MSE     147-MSE  |                                       196-MSE                         228-MSE                251-MSE 259-MSE                                             311-MSE    322-MSE                345-MSE         
                                                         49                                                                                                      154-MSE                                       200-MSE                                                                                                                                             348-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DXP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3DXP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DXP)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q473P7_CUPNJ | Q473P7)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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