3DXL - JenaLib

Title :   CRYSTAL STRUCTURE OF AED7 FROM AEDES AEGYPTI

Authors :   J. F. Andersen, E. Calvo, B. J. Mans, J. M. Ribeiro

Date :   24 Jul 08 (Deposition) - 03 Feb 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym./Biol. Unit : A

Keywords :   Odorant-Binding Protein, All-Helical, Allergen, Secreted (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Calvo, B. J. Mans, J. M. Ribeiro, J. F. Andersen
Multifunctionality And Mechanism Of Ligand Binding In A Mosquito Antiinflammatory Protein
Proc. Natl. Acad. Sci. Usa V. 106 3728 2009
PubMed-ID: 19234127 | Reference-DOI: 10.1073/PNAS.0813190106

Compounds

Molecule 1 - ALLERGEN AED A 2
	Chains	:	A
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	KIDNEY CELLS
	Expression System Common	:	HUMAN
	Expression System Plasmid	:	VR2001
	Expression System Strain	:	HEK 293
	Expression System Taxid	:	9606
	Expression System Vector Type	:	PLASMID
	Gene	:	D7
	Organism Common	:	YELLOWFEVER MOSQUITO
	Organism Scientific	:	AEDES AEGYPTI
	Organism Taxid	:	7159
	Strain	:	LIVERPOOL
	Synonym	:	37 KDA SALIVARY GLAND ALLERGEN AED A 2, PROTEIN D7

Structural Features

Chains, Units

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 6)

Asymmetric/Biological Unit (3, 6)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:147 , LYS A:150 , TYR A:274	BINDING SITE FOR RESIDUE CL A 304
2	AC2	SOFTWARE	PHE A:154 , ARG A:176 , TYR A:178 , ASP A:265 , HOH A:500 , HOH A:530 , HOH A:631 , HOH A:778 , HOH A:783	BINDING SITE FOR RESIDUE TRS A 305
3	AC3	SOFTWARE	MET A:17 , TRP A:34 , TRP A:37 , ASN A:39 , PHE A:50 , HOH A:637 , HOH A:731	BINDING SITE FOR RESIDUE GOL A 306
4	AC4	SOFTWARE	TRP A:37 , THR A:58 , LEU A:60 , TYR A:92 , SER A:124 , PHE A:128 , HOH A:386	BINDING SITE FOR RESIDUE GOL A 307
5	AC5	SOFTWARE	ILE A:175 , PHE A:186 , HIS A:189 , THR A:190 , TYR A:248 , PHE A:264 , HOH A:631	BINDING SITE FOR RESIDUE GOL A 308
6	AC6	SOFTWARE	GLU A:8 , PHE A:11 , ILE A:12 , ARG A:57 , ARG A:198 , HOH A:512 , HOH A:514 , HOH A:771	BINDING SITE FOR RESIDUE GOL A 309

SS Bonds (5, 5)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:299
 aligned with ALL2_AEDAE | P18153 from UniProtKB/Swiss-Prot  Length:321

    Alignment length:303
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318   
           ALL2_AEDAE    19 TGPFDPEEMLFTFTRCMEDNLEDGPNRLPMLAKWKEWINEPVDSPATQCFGKCVLVRTGLYDPVAQKFDASVIQEQFKAYPSLGEKSKVEAYANAVQQLPSTNNDCAAVFKAYDPVHKAHKDTSKNLFHGNKELTKGLYEKLGKDIRQKKQSYFEFCENKYYPAGSDKRQQLCKIRQYTVLDDALFKEHTDCVMKGIRYITKNNELDAEEVKRDFMQVNKDTKALEKVLNDCKSKEPSNAGEKSWHYYKCLVESSVKDDFKEAFDYREVRSQIYAFNLPKKQVYSKPAVQSQVMEIDGKQCPQ 321
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhhhhhhhhhhh..ee....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhhhh.....hhhhhhhhh......hhhhhhhhhhhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.................----.ee..ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dxl A   1 MGPFDPEEMLFIFTRCMEDNLEDGANRLPMLAKWKEWINEPVDSPATQCFGKCVLVRTGLYDPVAQKFDASVIQEQFKAYPSLGEKSKVEAYANAVKQLPSTNNDCAAVFKAYDPVHKAHKDTSKNLFHGNKELTKGLYEKLGKDIRQKKQSYFEFCENKYYPAGSDKRQQLCQIRQYTVLDDALFKEHTDCVMKGIRYITKDNQLDVEEVKRDFKLVNKDTKALEEVLNDCKSKEPSNAKEKSWHYYKCLVESSVKDDFKEAFDYREVRSQIYAFNLPKNQAYSKPAV----MEIDGKQCPQ 303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280        |-   |   300   
                                                                                                                                                                                                                                                                                                                          289  294

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

Asymmetric/Biological Unit(show GO term definitions)

Chain A (ALL2_AEDAE | P18153)

molecular function
	GO:0005549	odorant binding
cellular component
	GO:0005576	extracellular region

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