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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE PERIPLASMIC PROTEIN FROM DUF2874 FAMILY (BVU_2987) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.85 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  17 Jul 08  (Deposition) - 05 Aug 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Putative Periplasmic Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Das, R. D. Finn, D. Carlton, M. D. Miller, P. Abdubek, T. Astakhova, H. L. Axelrod, C. Bakolitsa, C. Chen, H. J. Chiu, M. Chiu, T. Clayton, M. C. Deller, L. Duan, K. Ellrott, D. Ernst, C. L. Farr, J. Feuerhelm, J. C. Grant, A. Grzechnik, G. W. Han, L. Jaroszewski, K. K. Jin, H. E. Klock, M. W. Knuth, P. Kozbial, S. S. Krishna, A. Kumar, D. Marciano, D. Mcmullan, A. T. Morse, E. Nigoghossian, A. Nopakun, L. Okach, C. Puckett, R. Reyes, C. L. Rife, N. Sefcovic, H. J. Tien, C. B. Trame, H. Van Den Bedem, D. Weekes, T. Wooten, Q. Xu, K. O. Hodgson, J. Wooley, M. A. Elsliger, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
The Structure Of Bvu2987 From Bacteroides Vulgatus Reveals Superfamily Of Bacterial Periplasmic Proteins With Possible Inhibitory Function.
Acta Crystallogr. , Sect. F V. 66 1265 2010
PubMed-ID: 20944221  |  Reference-DOI: 10.1107/S1744309109046788

(-) Compounds

Molecule 1 - PUTATIVE PERIPLASMIC PROTEIN
    Atcc: 8482
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_001300247.1, BVU_2987
    Organism Scientific: BACTEROIDES VULGATUS ATCC 8482
    Organism Taxid: 435590

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1CAC1Ligand/IonCACODYLATE ION
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:0 , ASP A:56 , TRP A:57 , GLY A:69 , LYS A:86 , TYR A:87 , HOH A:251BINDING SITE FOR RESIDUE CAC A 1

(-) SS Bonds  (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:127
 aligned with A6L4L1_BACV8 | A6L4L1 from UniProtKB/TrEMBL  Length:145

    Alignment length:127
                                    28        38        48        58        68        78        88        98       108       118       128       138       
         A6L4L1_BACV8    19 WADDDKPIQVNQLPQTAQTFIKTHFPDNKVAMAKMETDWFDKSYDVIFTNGDKLEFDKKGIWTEVNCKYSAVPVAVVPDAIKKYVATNYPDAKMLKIERDKHDYEVKLSNGWEIKFDMQFNVIDIDN 145
               SCOP domains -d3duea1 A:20-145 Putative periplasmic protein BVU2987                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhhhhhhhhh....eeeeeeeee..eeeeeeee....eeee.....eeeee......hhhhhhhhhhhhhhhhh....eeeeee...eeeeee....eeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3due A   0 GADDDKPIQVNQLPQTAQTFIKTHFPDNKVAmAKmETDWFDKSYDVIFTNGDKLEFDKKGIWTEVNCKYSAVPVAVVPDAIKKYVATNYPDAKmLKIERDKHDYEVKLSNGWEIKFDmQFNVIDIDN 145
                            ||      28        38        48 |  |   58        68        78        88        98       108   |   118       128       138       
                            ||                            50-MSE                                                       112-MSE                 136-MSE     
                            0|                               53-MSE                                                                                        
                            20
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

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