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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE F420 DEPENDENT NADP-REDUCTASE (ARTH_0613) FROM ARTHROBACTER SP. FB24 AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  15 Jul 08  (Deposition) - 12 Aug 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Coenzyme F420H2:Nadp+ Oxidoreductase (Yp_830112. 1) From Arthrobacter Sp. Fb24 At 1. 70 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NADP OXIDOREDUCTASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_830112.1, ARTH_0613
    Organism Scientific: ARTHROBACTER SP. FB24
    Organism Taxid: 290399
    Synonym: COENZYME F420-DEPENDENT PRECURSOR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric/Biological Unit (4, 17)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL1Ligand/IonCHLORIDE ION
3MSE12Mod. Amino AcidSELENOMETHIONINE
4NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:57 , PRO B:58 , HIS B:59 , HOH B:382BINDING SITE FOR RESIDUE CL B 227
2AC2SOFTWAREASN A:106 , LEU A:205 , HOH A:450BINDING SITE FOR RESIDUE ACT A 227
3AC3SOFTWAREASN B:106 , LEU B:108 , LEU B:205 , HOH B:537BINDING SITE FOR RESIDUE ACT B 228
4AC4SOFTWAREGLY A:7 , THR A:8 , GLY A:9 , THR A:10 , THR A:30 , ARG A:31 , ARG A:39 , ALA A:78 , THR A:79 , GLU A:80 , GLY A:81 , SER A:83 , ILE A:104 , ALA A:105 , ASN A:106 , ASN A:144 , ASN A:147 , ALA A:148 , HOH A:336 , HOH A:357 , HOH A:399 , HOH A:423 , HOH A:472 , HOH A:509 , HOH A:518 , HOH A:524 , HOH A:526 , HOH A:535 , HOH A:539 , HOH A:541BINDING SITE FOR RESIDUE NAP A 300
5AC5SOFTWAREGLY B:7 , THR B:8 , GLY B:9 , THR B:10 , THR B:30 , ARG B:31 , ARG B:39 , ALA B:78 , THR B:79 , GLU B:80 , GLY B:81 , SER B:83 , ILE B:104 , ALA B:105 , ASN B:106 , ASN B:144 , ASN B:147 , ALA B:148 , HOH B:301 , HOH B:388 , HOH B:460 , HOH B:492 , HOH B:511 , HOH B:521 , HOH B:524 , HOH B:531 , HOH B:537 , HOH B:542 , HOH B:543 , HOH B:545 , HOH B:554BINDING SITE FOR RESIDUE NAP B 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DTT)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Mse A:114 -Pro A:115
2Asn A:119 -Pro A:120
3Mse B:114 -Pro B:115
4Asn B:119 -Pro B:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DTT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DTT)

(-) Exons   (0, 0)

(no "Exon" information available for 3DTT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
 aligned with A0JSJ2_ARTS2 | A0JSJ2 from UniProtKB/TrEMBL  Length:226

    Alignment length:227
                             1                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       
         A0JSJ2_ARTS2     - -MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWGALGTANFNFKIAR 226
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh..eeeeee.hhhhhhh..-------.hhhhhhhhh...eeeehhhhhhhh.eeee..hhhhhhhhhhhhhhhhhh..eeee....ee.......ee......hhhhhhhhhh...eeee.....hhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dtt A   0 GmKIAVLGTGTVGRTmAGALADLGHEVTIGTRDPKATLARA-------PPFSQWLPEHPHVHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGmPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTmNASLmVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEmLLPVWIRLWGALGTANFNFKIAR 226
                             |       9     |  19        29        39|       49        59        69        79        89        99       109    |  119       129       139      |149 |     159       169       179       189       199   |   209       219       
                             |            15-MSE                   40      48                                                               114-MSE                         146-MSE|                                                 203-MSE                   
                             1-MSE                                                                                                                                               151-MSE                                                                       


Chain B from PDB  Type:PROTEIN  Length:222
 aligned with A0JSJ2_ARTS2 | A0JSJ2 from UniProtKB/TrEMBL  Length:226

    Alignment length:227
                             1                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       
         A0JSJ2_ARTS2     - -MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWGALGTANFNFKIAR 226
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh..eeeeee.hhhhhhhh...-----.hhhhhhhhh...eeeehhhhhhhh.eeee..hhhhhhhhhhhhhhhhhh..eeee....ee.......ee......hhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dtt B   0 GmKIAVLGTGTVGRTmAGALADLGHEVTIGTRDPKATLARAEP-----PPFSQWLPEHPHVHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGmPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTmNASLmVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEmLLPVWIRLWGALGTANFNFKIAR 226
                             |       9     |  19        29        39  |     49        59        69        79        89        99       109    |  119       129       139      |149 |     159       169       179       189       199   |   209       219       
                             1-MSE        15-MSE                     42    48                                                               114-MSE                         146-MSE|                                                 203-MSE                   
                                                                                                                                                                                 151-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DTT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3DTT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DTT)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (A0JSJ2_ARTS2 | A0JSJ2)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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