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Title :   CRYSTAL STRUCTURE OF THE METAL-DEPENDENT HD DOMAIN-CONTAINING HYDROLASE BH2835 FROM BACILLUS HALODURANS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BHR130.

Authors :   F. Forouhar, M. Su, J. Seetharaman, H. Janjua, Y. Fang, R. Xiao, K. Cunningham, L. -C. Ma, L. A. Owen, D. Wang, S. Tong, J. K. Everett, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)

Date :   15 Jul 08 (Deposition) - 09 Sep 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   All Alpha-Helical Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Forouhar, M. Su, J. Seetharaman, H. Janjua, Y. Fang, R. Xiao, K. Cunningham, L. -C. Ma, L. A. Owen, D. Wang, S. Tong, J. K. Everett, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Metal-Dependent Hd Domain-Containing Hydrolase Bh2835 From Bacillus Halodurans, Northeast Structural Genomics Consortium Target Bhr130.
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - BH2835 PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21
	Expression System Strain	:	BL21(DE3)+MAGIC
	Expression System Vector Type	:	PLASMID
	Gene	:	BH2835
	Organism Scientific	:	BACILLUS HALODURANS
	Strain	:	C-125

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 32)

No.	Name	Count	Type	Full Name
1	MSE	32	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 16)

No.	Name	Count	Type	Full Name
1	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 16)

No.	Name	Count	Type	Full Name
1	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 3DTO)

(no "SS Bond" information available for 3DTO)

(no "Cis Peptide Bond" information available for 3DTO)

(no "SAP(SNP)/Variant" information available for 3DTO)

(no "PROSITE Motif" information available for 3DTO)

(no "Exon" information available for 3DTO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:189
 aligned with Q9K916_BACHD | Q9K916 from UniProtKB/TrEMBL  Length:215

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         Q9K916_BACHD     2 NEQAILQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDIINTISFKGGHGQSLATREAMVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRETMTVEEYRHGKSTAINHFYEKLFKLKDLMNTETGKQLAKERHVFMEQFIERFLSEWNG 213
               SCOP domains d3dtoa1 A:2-213 Unch    aracterized protein BH2835                                                                                                                                                                   SCOP domains
               CATH domains 3dtoA01 A:2-100 HD-d    omain/PDEase-like                                                                    --------------------------------------------  --------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh....----hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...-------hhhhhhhhhhhhh...hhhhhhhhhhhhhh.----------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........--..hhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dto A   2 NEQAILQSAEAWVKKQLmDE----DWYHIRRVTLmAKAIGEQEKVDVFVVQIAALFHDLID-------ETAKQQLIDWmEAAGVPSQKIDHTmDIINTI----------ATREAmVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIR--mTVEEYRHGKSTAINHFYEKLFKLKDLmNTETGKQLAKERHVFmEQFIERFLSEWNG 213
                                    11       |21    |   31    |   41        51        61|       71        81        91  |     |-       111    |  121       131       141       151  |  | 161       171       181  |    191       201       211  
                                            19-MSE 26        36-MSE                    62      70        80-MSE        94-MSE00        111    |                                   154  |                        184-MSE         200-MSE         
                                              21                                                                                            116-MSE                                  157-MSE

Chain B from PDB  Type:PROTEIN  Length:189
 aligned with Q9K916_BACHD | Q9K916 from UniProtKB/TrEMBL  Length:215

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         Q9K916_BACHD     2 NEQAILQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDIINTISFKGGHGQSLATREAMVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRETMTVEEYRHGKSTAINHFYEKLFKLKDLMNTETGKQLAKERHVFMEQFIERFLSEWNG 213
               SCOP domains d3dtob1 B:2-213 Unch    aracterized protein BH2835                                                                                                                                                                   SCOP domains
               CATH domains 3dtoB01 B:2-100 HD-d    omain/PDEase-like                                                                    --------------------------------------------  --------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh....----hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...-------hhhhhhhhhhhhh...hhhhhhhhhhhhhh.----------.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...........--..hhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dto B   2 NEQAILQSAEAWVKKQLmDE----DWYHIRRVTLmAKAIGEQEKVDVFVVQIAALFHDLID-------ETAKQQLIDWmEAAGVPSQKIDHTmDIINTI----------ATREAmVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIR--mTVEEYRHGKSTAINHFYEKLFKLKDLmNTETGKQLAKERHVFmEQFIERFLSEWNG 213
                                    11       |21    |   31    |   41        51        61|       71        81        91  |     |-       111    |  121       131       141       151  |  | 161       171       181  |    191       201       211  
                                            19-MSE 26        36-MSE                    62      70        80-MSE        94-MSE00        111    |                                   154  |                        184-MSE         200-MSE         
                                              21                                                                                            116-MSE                                  157-MSE

Chain C from PDB  Type:PROTEIN  Length:189
 aligned with Q9K916_BACHD | Q9K916 from UniProtKB/TrEMBL  Length:215

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         Q9K916_BACHD     2 NEQAILQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDIINTISFKGGHGQSLATREAMVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRETMTVEEYRHGKSTAINHFYEKLFKLKDLMNTETGKQLAKERHVFMEQFIERFLSEWNG 213
               SCOP domains d3dtoc1 C:2-213 Unch    aracterized protein BH2835                                                                                                                                                                   SCOP domains
               CATH domains 3dtoC01 C:2-100 HD-d    omain/PDEase-like                                                                    --------------------------------------------  --------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh....----hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...-------hhhhhhhhhhhhh...hhhhhhhhhhhhhh.----------.hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...........--..hhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dto C   2 NEQAILQSAEAWVKKQLmDE----DWYHIRRVTLmAKAIGEQEKVDVFVVQIAALFHDLID-------ETAKQQLIDWmEAAGVPSQKIDHTmDIINTI----------ATREAmVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIR--mTVEEYRHGKSTAINHFYEKLFKLKDLmNTETGKQLAKERHVFmEQFIERFLSEWNG 213
                                    11       |21    |   31    |   41        51        61|       71        81        91  |     |-       111    |  121       131       141       151  |  | 161       171       181  |    191       201       211  
                                            19-MSE 26        36-MSE                    62      70        80-MSE        94-MSE00        111    |                                   154  |                        184-MSE         200-MSE         
                                              21                                                                                            116-MSE                                  157-MSE

Chain D from PDB  Type:PROTEIN  Length:189
 aligned with Q9K916_BACHD | Q9K916 from UniProtKB/TrEMBL  Length:215

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         Q9K916_BACHD     2 NEQAILQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDIINTISFKGGHGQSLATREAMVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRETMTVEEYRHGKSTAINHFYEKLFKLKDLMNTETGKQLAKERHVFMEQFIERFLSEWNG 213
               SCOP domains d3dtod1 D:2-213 Unch    aracterized protein BH2835                                                                                                                                                                   SCOP domains
               CATH domains 3dtoD01 D:2-100 HD-d    omain/PDEase-like                                                                    --------------------------------------------  --------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh....----hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...-------hhhhhhhhhhhhh...hhhhhhhhhhhhhh.----------.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...........--..hhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dto D   2 NEQAILQSAEAWVKKQLmDE----DWYHIRRVTLmAKAIGEQEKVDVFVVQIAALFHDLID-------ETAKQQLIDWmEAAGVPSQKIDHTmDIINTI----------ATREAmVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIR--mTVEEYRHGKSTAINHFYEKLFKLKDLmNTETGKQLAKERHVFmEQFIERFLSEWNG 213
                                    11       |21    |   31    |   41        51        61|       71        81        91  |     |-       111    |  121       131       141       151  |  | 161       171       181  |    191       201       211  
                                            19-MSE 26        36-MSE                    62      70        80-MSE        94-MSE00        111    |                                   154  |                        184-MSE         200-MSE         
                                              21                                                                                            116-MSE                                  157-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: All alpha proteins (14657)

Fold: HD-domain/PDEase-like (204)

Superfamily: HD-domain/PDEase-like (204)

Family: HD domain (20)

Protein domain: Uncharacterized protein BH2835 (1)

Bacillus halodurans [TaxId: 86665] (1)

1a	d3dtoa1	A:2-213
1b	d3dtob1	B:2-213
1c	d3dtoc1	C:2-213
1d	d3dtod1	D:2-213

Asymmetric Unit

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Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Cyclin A; domain 1 (136)

Homologous Superfamily: HD-domain/PDEase-like (5)

Bacillus halodurans. Strain: c-125. (1)

1a	3dtoA01	A:2-100
1b	3dtoB01	B:2-100
1c	3dtoC01	C:2-100
1d	3dtoD01	D:2-100

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Asymmetric Unit(hide GO term definitions)

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