3DR8 - JenaLib

Title :   STRUCTURE OF YNCA, A PUTATIVE ACETYLTRANSFERASE FROM SALMONELLA TYPHIMURIUM WITH ITS COFACTOR ACETYL-COA

Authors :   A. U. Singer, T. Skarina, O. Onopriyenko, A. M. Edwards, W. F. Anderson, A. Savchenko, Center For Structural Genomics Of Infectious Di (Csgid)

Date :   10 Jul 08 (Deposition) - 12 Aug 08 (Release) - 16 Feb 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A,B

Keywords :   Salmonella Essential Gene Idp0086 Acetyltransferase Cofactor Acetyl- Coa, Transferase. Funded By The National Institute Of Allergy And Infectious Diseases Of Nih Contract Number Hhsn272200700058C, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. U. Singer, T. Skarina, O. Onopriyenko, A. M. Edwards, W. F. Anderson A. Savchenko
Structure Of Ynca, A Putative Acetyltransferase From Salmonella Typhimurium With Its Cofactor Acetyl-Coa
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 19)

Sites (11, 11)

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:119 , LEU A:155 , ACT A:1429 , HOH A:1436 , PHE B:77	BINDING SITE FOR RESIDUE ACT A 1428
02	AC2	SOFTWARE	TRP A:71 , GLU A:82 , PHE A:157 , ACT A:1428 , ARG B:72	BINDING SITE FOR RESIDUE ACT A 1429
03	AC3	SOFTWARE	PHE A:77 , HOH A:1540 , TRP B:29 , GLY B:119 , LEU B:155 , ACT B:1428 , HOH B:1449	BINDING SITE FOR RESIDUE ACT A 1430
04	AC4	SOFTWARE	ACT A:1430 , TRP B:71 , ARG B:72 , GLU B:82 , PHE B:157	BINDING SITE FOR RESIDUE ACT B 1428
05	AC5	SOFTWARE	HIS B:24	BINDING SITE FOR RESIDUE CL B 1429
06	AC6	SOFTWARE	HIS A:132 , VAL A:138	BINDING SITE FOR RESIDUE CL A 1431
07	AC7	SOFTWARE	HIS B:24	BINDING SITE FOR RESIDUE CL B 1430
08	AC8	SOFTWARE	HIS A:20 , PRO A:89 , ASP A:163 , GLU A:164 , HIS A:165 , HOH A:1611	BINDING SITE FOR RESIDUE CL A 1432
09	AC9	SOFTWARE	LYS A:8 , PHE B:149 , ARG B:151 , HOH B:1548	BINDING SITE FOR RESIDUE ACT B 1431
10	BC1	SOFTWARE	ALA A:27 , HIS A:83 , SER A:84 , VAL A:85 , TYR A:86 , VAL A:87 , GLN A:92 , GLY A:93 , LYS A:94 , GLY A:95 , LEU A:96 , GLY A:97 , ARG A:98 , ALA A:118 , ASN A:124 , ALA A:125 , ALA A:126 , SER A:127 , ARG A:129 , SER A:133 , HOH A:1489 , HOH A:1513 , HOH A:1565 , HOH A:1579 , HOH A:1622 , HOH A:1627 , GLU B:57 , GLY B:60	BINDING SITE FOR RESIDUE ACO A 1423
11	BC2	SOFTWARE	PHE A:5 , ARG A:110 , HOH A:1439 , ALA B:27 , HIS B:83 , SER B:84 , VAL B:85 , TYR B:86 , VAL B:87 , GLN B:92 , GLY B:93 , LYS B:94 , GLY B:95 , LEU B:96 , GLY B:97 , ARG B:98 , ALA B:118 , ASN B:124 , ALA B:126 , SER B:127 , ARG B:129 , HOH B:1472 , HOH B:1481 , HOH B:1484 , HOH B:1489 , HOH B:1535 , HOH B:1554 , HOH B:1569	BINDING SITE FOR RESIDUE ACO B 1423

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:173
 aligned with MDDA_SALTY | Q8ZPD3 from UniProtKB/Swiss-Prot  Length:171

    Alignment length:173
                              1                                                                                                                                                                          
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168   
           MDDA_SALTY     - --MTIRFADKADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKHVMVAGIESQNAASIRLHHSLGFTVTAQMPQVGVKFGRWLDLTFMQLQLDEHAAPDAC 171
               SCOP domains --d3dr8a1 A:1-171 automated matches                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh..eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --GNAT  PDB: A:1-163 UniProt: 1-163                                                                                                                                  -------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dr8 A  -2 SNmTIRFADKADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKHVmVAGIESQNAASIRLHHSLGFTVTAQmPQVGVKFGRWLDLTFmQLQLDEHAAPDAC 171
                             ||      8        18        28        38        48        58        68        78        88        98       108       118       128       138   |   148       158       168   
                             ||                                                                                                                116-MSE                   142-MSE         158-MSE         
                            -1|                                                                                                                                                                          
                              1-MSE

Chain B from PDB  Type:PROTEIN  Length:173
 aligned with MDDA_SALTY | Q8ZPD3 from UniProtKB/Swiss-Prot  Length:171

    Alignment length:173
                              1                                                                                                                                                                          
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168   
           MDDA_SALTY     - --MTIRFADKADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKHVMVAGIESQNAASIRLHHSLGFTVTAQMPQVGVKFGRWLDLTFMQLQLDEHAAPDAC 171
               SCOP domains d3dr8b_ B: automated matches                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --GNAT  PDB: B:1-163 UniProt: 1-163                                                                                                                                  -------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dr8 B  -1 NAmTIRFADKADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKHVmVAGIESQNAASIRLHHSLGFTVTAQmPQVGVKFGRWLDLTFmQLQLDEHAAPDAC 171
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138   |   148       158       168   
                              1-MSE                                                                                                            116-MSE                   142-MSE         158-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (MDDA_SALTY | Q8ZPD3)

molecular function
	GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0004596	peptide alpha-N-acetyltransferase activity	Catalysis of the reaction: acetyl-CoA + peptide = CoA + N-alpha-acetylpeptide. This reaction is the acetylation of the N-terminal amino acid residue of a peptide or protein.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
	GO:0006474	N-terminal protein amino acid acetylation	The acetylation of the N-terminal amino acid of proteins.
cellular component
	GO:0031248	protein acetyltransferase complex	A complex that catalyzes the transfer of an acetyl group to a protein acceptor molecule.

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