3DO5 - JenaLib

Title :   CRYSTAL STRUCTURE OF PUTATIVE HOMOSERINE DEHYDROGENASE (NP_069768.1) FROM ARCHAEOGLOBUS FULGIDUS AT 2.20 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   03 Jul 08 (Deposition) - 02 Sep 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Np_069768. 1, Putative Homoserine Dehydrogenase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Homoserine Dehydrogenase (Np_069768. 1) From Archaeoglobus Fulgidus At 2. 20 A Resolution
To Be Published
PubMed: search

Compounds

Molecule 1 - HOMOSERINE DEHYDROGENASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Vector Type	:	PLASMID
	Gene	:	NP_069768.1, AF_0935
	Organism Common	:	ARCHAEA
	Organism Scientific	:	ARCHAEOGLOBUS FULGIDUS
	Organism Taxid	:	2234
	Synonym	:	HOM

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	MSE	9	Mod. Amino Acid	SELENOMETHIONINE
2	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (3, 24)

No.	Name	Count	Type	Full Name
1	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
2	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PO4	4	Ligand/Ion	PHOSPHATE ION

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:41 , SER A:42 , LYS A:59 , HOH A:361	BINDING SITE FOR RESIDUE PO4 A 327
2	AC2	SOFTWARE	THR A:89 , ASN A:114 , LYS A:115 , GLY A:116 , TYR A:205	BINDING SITE FOR RESIDUE PO4 A 328
3	AC3	SOFTWARE	SER A:262 , ARG A:263 , GLU A:264 , LYS A:265	BINDING SITE FOR RESIDUE PEG A 329

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:320
 aligned with O29327_ARCFU | O29327 from UniProtKB/TrEMBL  Length:326

    Alignment length:324
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    
         O29327_ARCFU     1 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANTIGVKASYEDVEVTGITQITPEAFQVAAEKGYTIRLIAEVSREKLKVSPRLVPFHHPLAIKGTMNAAMFKTDTAGSIFVAGRGAGKEETASAILSDLYEIYAG 324
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....eee...hhhhhhhhhhhhh......hhhhhhhhh...eeee.....----hhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhh...eehhhhh.....hhhhhhh......eeeeeee.hhhhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....hhhhhee......hhhhhhhhhh..eeeeeeeee....eeeeeeeee..hhhhh....eeeeeee....eeeeee...hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3do5 A   1 mIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRmKRETGmLRDDAKAIEVVRSADYDVLIEASVTR----EGVNYIREALKRGKHVVTSNKGPLVAEFHGLmSLAERNGVRLmYEATVGGAmPVVKLAKRYLALCEIESVKGIFNGTCNYILSRmEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANTIGVKASYEDVEVTGITQITPEAFQVAAEKGYTIRLIAEVSREKLKVSPRLVPFHHPLAIKGTmNAAmFKTDTAGSIFVAGRGAGKEETASAILSDLYEIYAG 324
                            |       10        20        30        40        50       |60   |    70        80        90    |  100       110       120     | 130      |140     | 150       160       170       180       190       200       210       220       230       240       250       260       270       280    |  290       300       310       320    
                            |                                                       58-MSE |                        90   95                            126-MSE    137-MSE  146-MSE                          179-MSE                                                                                                   285-MSE                                   
                            1-MSE                                                         64-MSE                                                                                                                                                                                                                          289-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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