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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE PROTEIN ATU2129 (UNKNOWN FUNCTION) FROM AGROBACTERIUM TUMEFACIENS STR. C58
 
Authors :  K. Tan, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak, Midwes For Structural Genomics (Mcsg)
Date :  02 Jul 08  (Deposition) - 02 Sep 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apc6114, Protein Atu2129, Agrobacterium Tumefaciens Str. C58, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak
The Crystal Structure Of The Protein Atu2129 (Unknown Function) From Agrobacterium Tumefaciens Str. C58
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN ATU2129
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21
    Expression System Vector Type: PLASMID
    Gene: AGR_C_3862, ATU2129
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 176299
    Strain: STR. C58

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3DNH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DNH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3DNH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DNH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DNH)

(-) Exons   (0, 0)

(no "Exon" information available for 3DNH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
 aligned with A9CI98_AGRFC | A9CI98 from UniProtKB/TrEMBL  Length:254

    Alignment length:251
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253 
         A9CI98_AGRFC     4 VAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 254
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3dnhA01 A           :4-171 Electron Transport, Fmn-binding Protein; Chain A                                                                                             ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........-----------.hhhhhhhhhhhhh.eeeeeee......eeeeeee.ee.....eeeeee..hhhhhhhhhh.eeeeee.hhhhhhhhhh.eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhh....eeeeeeeeeeeeee.------...hhhhhh.....hhhhhhhhhhhhhhhhh..hhhhhhhhhh.......eeeeee..eeeee....eeeee......hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dnh A   4 VAPPVITPR-----------FEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNmETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQING------SNITPADLRTDLSGAEELmAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 254
                                    |-         -|       33        43        53        63        73       |83        93       103       113       123       133       143       153  |    163       173       183       193       203       213       223       233       243       253 
                                   12          24                                                       81-MSE                                                                    156    163               181-MSE                                                                     


Chain B from PDB  Type:PROTEIN  Length:233
 aligned with A9CI98_AGRFC | A9CI98 from UniProtKB/TrEMBL  Length:254

    Alignment length:248
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244        
         A9CI98_AGRFC     5 APPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQL 252
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3dnhB01         B:5-171 Electron Transport, Fmn-binding Protein; Chain A                                                                                               --------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........--------..hhhhhhhhhhhhhhh.eeeeeee......eeeeeee.ee.....eeeeee..hhhhhhhhhh.eeeeee......hhhhh.eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeeeeee.-------...hhhhh.....hhhhhhhhhhhhhhhhh..hhhhhhhhhh.......eeeeee..eeeee....eeeee......hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dnh B   5 APPVITPR--------GAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNmETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQING-------NITPADLRTDLSGAEELmAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQL 252
                                   | -      | 24        34        44        54        64        74      | 84        94       104       114       124       134       144       154 |     164       174      |184       194       204       214       224       234       244        
                                  12       21                                                          81-MSE                                                                    156     164              181-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DNH)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DNH)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (A9CI98_AGRFC | A9CI98)
molecular function
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

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