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Title :   CRYSTAL STRUCTURE OF A PUTATIVE GENERAL STRESS FAMILY PROTEIN (XCC2264) FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS AT 2.30 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   30 Jun 08 (Deposition) - 26 Aug 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (2x)

Keywords :   Pnp-Oxidase Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative General Stress Protein 26 With A Pnp-Oxidase Like Fold (Np_637619. 1) From Xanthomonas Campestris At 2. 30 A Resolution
To Be Published
PubMed: search

Molecule 1 - PUTATIVE GENERAL STRESS PROTEIN 26 WITH A PNP-OXIDASE LIKE FOLD
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Vector Type	:	PLASMID
	Gene	:	NP_637619.1, XCC2264
	Organism Scientific	:	XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
	Organism Taxid	:	340

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 11)

No.	Name	Count	Type	Full Name
1	MSE	11	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 22)

No.	Name	Count	Type	Full Name
1	MSE	22	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 3DMB)

(no "SS Bond" information available for 3DMB)

Asymmetric Unit

No.	Residues
1	Gly A:46	-	Pro A:47
2	Gly B:46	-	Pro B:47
3	Gly C:46	-	Pro C:47

(no "SAP(SNP)/Variant" information available for 3DMB)

(no "PROSITE Motif" information available for 3DMB)

(no "Exon" information available for 3DMB)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:146
 aligned with B0RS32_XANCB | B0RS32 from UniProtKB/TrEMBL  Length:310

    Alignment length:146
                                   157       167       177       187       197       207       217       227       237       247       257       267       277       287      
         B0RS32_XANCB   148 KMADPKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 293
               SCOP domains d3dmba_ A: automated matches                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhheeeeee........eeeeee........eeeee.....hhhhh...eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhhhhhh.hhhhh...eeeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dmb A   0 GmADPKELQDKFWKALKSDRTVmLGLDGVEDGHARPmTAQIEGDSGGPIWFFTSKDNALIAmLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 145
                             |       9        19  |     29      | 39        49        59 |      69        79        89        99       109       119       129       139      
                             |                   22-MSE        36-MSE                   61-MSE                                                                                
                             1-MSE

Chain A from PDB  Type:PROTEIN  Length:146
 aligned with Q8P8H7_XANCP | Q8P8H7 from UniProtKB/TrEMBL  Length:162

    Alignment length:146
                             1                                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139      
         Q8P8H7_XANCP     - -MADPKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 145
               SCOP domains d3dmba_ A: automated matches                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhheeeeee........eeeeee........eeeee.....hhhhh...eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhhhhhh.hhhhh...eeeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dmb A   0 GmADPKELQDKFWKALKSDRTVmLGLDGVEDGHARPmTAQIEGDSGGPIWFFTSKDNALIAmLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 145
                             |       9        19  |     29      | 39        49        59 |      69        79        89        99       109       119       129       139      
                             1-MSE               22-MSE        36-MSE                   61-MSE

Chain B from PDB  Type:PROTEIN  Length:145
 aligned with B0RS32_XANCB | B0RS32 from UniProtKB/TrEMBL  Length:310

    Alignment length:145
                                   158       168       178       188       198       208       218       228       238       248       258       268       278       288     
         B0RS32_XANCB   149 MADPKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 293
               SCOP domains d3dmbb_ B: automated matches                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhheeeeee..hhhhh.eeee..........eeeeee...hhhhhhh..eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dmb B   1 mADPKELQDKFWKALKSDRTVmLGLDGVEDGHARPmTAQIEGDSGGPIWFFTSKDNALIAmLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 145
                            |       10        20 |      30     |  40        50        60|       70        80        90       100       110       120       130       140     
                            1-MSE               22-MSE        36-MSE                   61-MSE

Chain B from PDB  Type:PROTEIN  Length:145
 aligned with Q8P8H7_XANCP | Q8P8H7 from UniProtKB/TrEMBL  Length:162

    Alignment length:145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     
         Q8P8H7_XANCP     1 MADPKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 145
               SCOP domains d3dmbb_ B: automated matches                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhheeeeee..hhhhh.eeee..........eeeeee...hhhhhhh..eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhhhhh..hhhhh..eeeeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dmb B   1 mADPKELQDKFWKALKSDRTVmLGLDGVEDGHARPmTAQIEGDSGGPIWFFTSKDNALIAmLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 145
                            |       10        20 |      30     |  40        50        60|       70        80        90       100       110       120       130       140     
                            1-MSE               22-MSE        36-MSE                   61-MSE

Chain C from PDB  Type:PROTEIN  Length:134
 aligned with B0RS32_XANCB | B0RS32 from UniProtKB/TrEMBL  Length:310

    Alignment length:142
                                   161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         B0RS32_XANCB   152 PKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 293
               SCOP domains d3dmbc_ C: automated         matches                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhheeee.--------.eeeeee........eeeeee...hhhhhhh..eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhhhh...hhhhh..eeeeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dmb C   4 PKELQDKFWKALKSDRTVmLG--------ARPmTAQIEGDSGGPIWFFTSKDNALIAmLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 145
                                    13        23|       33  |     43        53       |63        73        83        93       103       113       123       133       143  
                                             22-MSE     33  |                       61-MSE                                                                                
                                               24          36-MSE

Chain C from PDB  Type:PROTEIN  Length:134
 aligned with Q8P8H7_XANCP | Q8P8H7 from UniProtKB/TrEMBL  Length:162

    Alignment length:142
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143  
         Q8P8H7_XANCP     4 PKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 145
               SCOP domains d3dmbc_ C: automated         matches                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhheeee.--------.eeeeee........eeeeee...hhhhhhh..eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhhhh...hhhhh..eeeeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dmb C   4 PKELQDKFWKALKSDRTVmLG--------ARPmTAQIEGDSGGPIWFFTSKDNALIAmLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG 145
                                    13        23|       33  |     43        53       |63        73        83        93       103       113       123       133       143  
                                             22-MSE     33  |                       61-MSE                                                                                
                                               24          36-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Split barrel-like (99)

Superfamily: FMN-binding split barrel (90)

Family: automated matches (24)

Protein domain: automated matches (24)

Xanthomonas campestris [TaxId: 340] (1)

1a	d3dmba_	A:
1b	d3dmbb_	B:
1c	d3dmbc_	C:

(no "CATH Domain" information available for 3DMB)

(no "Pfam Domain" information available for 3DMB)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (B0RS32_XANCB | B0RS32)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain A,B,C (Q8P8H7_XANCP | Q8P8H7)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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	Sites
(no "Sites" information available for 3dmb)

	Cis Peptide Bonds
		Gly A:46 - Pro A:47	[ RasMol ]
		Gly B:46 - Pro B:47	[ RasMol ]
		Gly C:46 - Pro C:47	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (1, 11)

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SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

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