3DLC - JenaLib

Title :   CRYSTAL STRUCTURE OF A PUTATIVE S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE (MMP1179) FROM METHANOCOCCUS MARIPALUDIS AT 1.15 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   27 Jun 08 (Deposition) - 26 Aug 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.15

Chains :   Asym./Biol. Unit : A

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Np_988299. 1) From Methanococcus Maripaludis Jj (Dsm 2067) At 1. 15 A Resolution
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:184 , HOH A:275 , HOH A:289	BINDING SITE FOR RESIDUE ACT A 219
2	AC2	SOFTWARE	PHE A:8 , TYR A:28 , GLY A:50 , SER A:51 , GLY A:52 , ASP A:72 , PHE A:73 , SER A:74 , GLY A:99 , ASP A:100 , ARG A:117 , GLY A:118 , SER A:119 , TRP A:123 , GLU A:216 , ILE A:218 , HOH A:239 , HOH A:268 , HOH A:297	BINDING SITE FOR RESIDUE SAM A 220
3	AC3	SOFTWARE	ILE A:19 , LYS A:165 , ASN A:166 , ILE A:192 , GLY A:193 , GLN A:215 , HOH A:228 , HOH A:354 , HOH A:357	BINDING SITE FOR RESIDUE GOL A 221
4	AC4	SOFTWARE	PHE A:8 , PRO A:29 , PHE A:73 , SER A:74 , HOH A:321 , HOH A:375 , HOH A:470 , HOH A:489	BINDING SITE FOR RESIDUE GOL A 222

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:219
 aligned with Q6LY14_METMP | Q6LY14 from UniProtKB/TrEMBL  Length:218

    Alignment length:219
                             1                                                                                                                                                                                                                         
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209         
         Q6LY14_METMP     - -MSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGNCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADADLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVTTAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGVSSYEIILEDEGFWIIISKTDQEVI 218
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhheeeeeeee.hhhhhhhhhhhhhhh.....eeeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dlc A   0 GmSENKKKFDKKGAKNmDEISKTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHmNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEmIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTDQEVI 218
                             |       9      | 19        29        39        49        59        69       |79        89        99       109       119       129       139       149       159  |    169       179       189       199       209         
                             |             16-MSE                                                       77-MSE                                                                              162-MSE                                                    
                             1-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q6LY14_METMP | Q6LY14)

molecular function
	GO:0051539	4 iron, 4 sulfur cluster binding	Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.

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