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(-) Description

Title :  CRYSTAL STRUCTURE OF THE Q7W9W5_BORPA PROTEIN FROM BORDETELLA PARAPERTUSSIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BPR208C.
 
Authors :  S. M. Vorobiev, M. Su, J. Seetharaman, D. Wang, C. Ciccosanti, E. L. Foote, L. Mao, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  26 Jun 08  (Deposition) - 26 Aug 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Q7W9W5, Borpa, Thioesterase Superfamily, Pf03061, Nesg, Bpr208C, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. M. Vorobiev, M. Su, J. Seetharaman, D. Wang, C. Ciccosanti, E. L. Foote, L. Mao, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Q7W9W5_borpa Protein From Bordetella Parapertussis.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THIOESTERASE SUPERFAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21-23C
    Expression System Strain: BL21(DE3) +MAGIC
    Expression System Vector Type: PLASMID
    Gene: BPP1634
    Organism Scientific: BORDETELLA PARAPERTUSSIS
    Organism Taxid: 519
    Strain: 12822/ATCC BAA-587/NCTC 13253

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3DKZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DKZ)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:125
 aligned with Q7W9W5_BORPA | Q7W9W5 from UniProtKB/TrEMBL  Length:169

    Alignment length:125
                                    48        58        68        78        88        98       108       118       128       138       148       158     
         Q7W9W5_BORPA    39 TDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMNTSFMSPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKIIQ 163
               SCOP domains d3dkza_ A: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhh..eeeeee..eeeeee.............hhhhhhhhhhhhhhhh.........eeeeeeeeee.......eeeeeeeeee...eeeeeeeeee....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dkz A  39 TDFFGLTIPFmQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLmSVLDFTLGAAIRGDTPEVGVATIDmNTSFmSPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKIIQ 163
                                    48|       58        68        78        88        98       108   |   118       128       138       148       158     
                                     49-MSE                                87-MSE                  112-MSE|                                              
                                                                                                        117-MSE                                          


Chain B from PDB  Type:PROTEIN  Length:124
 aligned with Q7W9W5_BORPA | Q7W9W5 from UniProtKB/TrEMBL  Length:169

    Alignment length:124
                                    48        58        68        78        88        98       108       118       128       138       148       158    
         Q7W9W5_BORPA    39 TDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMNTSFMSPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKII 162
               SCOP domains d3dkzb_ B: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhh..eeeee...eeeeee..hhhhh......hhhhhhhhhhhhhhhh........eeeeeeeeeee.......eeeeeeeeee...eeeeeeeee.....eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dkz B  39 TDFFGLTIPFmQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLmSVLDFTLGAAIRGDTPEVGVATIDmNTSFmSPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKII 162
                                    48|       58        68        78        88        98       108   |   118       128       138       148       158    
                                     49-MSE                                87-MSE                  112-MSE|                                             
                                                                                                        117-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3DKZ)

(-) Pfam Domains  (0, 0)

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