3DJ3 - JenaLib

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Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF C-TERMINAL TRUNCATED TIP-1 (6-113)

Authors :   Y. Shen

Date :   21 Jun 08 (Deposition) - 21 Oct 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Tip-1, Pdz Domain, Cytoplasm, Nucleus, Wnt Signaling Pathway, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Zhang, X. Yan, C. Shi, X. Yang, Y. Guo, C. Tian, J. Long, Y. Shen
Structural Basis Of Beta-Catenin Recognition By Tax-Interacting Protein-1
J. Mol. Biol. V. 384 255 2008
PubMed-ID: 18835279 | Reference-DOI: 10.1016/J.JMB.2008.09.034
(for further references see the PDB file header)

Molecule 1 - TAX1-BINDING PROTEIN 3
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	C-TERMINAL TRUNCATION, UNP RESIDUES 1-112
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	TAX INTERACTION PROTEIN 1, TIP-1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3DJ3)

(no "Site" information available for 3DJ3)

(no "SS Bond" information available for 3DJ3)

(no "Cis Peptide Bond" information available for 3DJ3)

(no "SAP(SNP)/Variant" information available for 3DJ3)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	TX1B3_MOUSE	15-112	4	A:15-111 B:15-112 C:15-111 D:15-111

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	TX1B3_MOUSE	15-112	1	A:15-111 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	TX1B3_MOUSE	15-112	1	- B:15-112 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	TX1B3_MOUSE	15-112	1	- - C:15-111 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	TX1B3_MOUSE	15-112	1	- - - D:15-111

(no "Exon" information available for 3DJ3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:100
 aligned with TX1B3_MOUSE | Q9DBG9 from UniProtKB/Swiss-Prot  Length:124

    Alignment length:100
                                    21        31        41        51        61        71        81        91       101       111
          TX1B3_MOUSE    12 VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
               SCOP domains d3dj3a_ A: automated matches                                                                         SCOP domains
               CATH domains 3dj3A00 A:12-111  [code=2.30.42.10, no name defined]                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.eee..eee..eeeee....hhhhh..........eeeeee...hhhhhhh.....eeeee..ee....hhhhhhhhhh.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PDZ  PDB: A:15-111 UniProt: 15-112                                                                PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 3dj3 A  12 VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
                                    21        31        41        51        61        71        81        91       101       111

Chain B from PDB  Type:PROTEIN  Length:101
 aligned with TX1B3_MOUSE | Q9DBG9 from UniProtKB/Swiss-Prot  Length:124

    Alignment length:101
                                    21        31        41        51        61        71        81        91       101       111 
          TX1B3_MOUSE    12 VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 112
               SCOP domains d3dj3b_ B: automated matches                                                                          SCOP domains
               CATH domains 3dj3B00 B:12-112  [code=2.30.42.10, no name defined]                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.eee..eee...eeee...................eeeee....hhhhhhh.....eeeee..ee....hhhhhhhhhhh....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PDZ  PDB: B:15-112 UniProt: 15-112                                                                 PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3dj3 B  12 VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 112
                                    21        31        41        51        61        71        81        91       101       111

Chain C from PDB  Type:PROTEIN  Length:100
 aligned with TX1B3_MOUSE | Q9DBG9 from UniProtKB/Swiss-Prot  Length:124

    Alignment length:100
                                    21        31        41        51        61        71        81        91       101       111
          TX1B3_MOUSE    12 VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
               SCOP domains d3dj3c_ C: automated matches                                                                         SCOP domains
               CATH domains 3dj3C00 C:12-111  [code=2.30.42.10, no name defined]                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.ee....ee..eeeee....hhhhh..........eeeeee...............eeeee........hhhhhhhhhh.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PDZ  PDB: C:15-111 UniProt: 15-112                                                                PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 3dj3 C  12 VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
                                    21        31        41        51        61        71        81        91       101       111

Chain D from PDB  Type:PROTEIN  Length:99
 aligned with TX1B3_MOUSE | Q9DBG9 from UniProtKB/Swiss-Prot  Length:124

    Alignment length:99
                                    22        32        42        52        62        72        82        92       102         
          TX1B3_MOUSE    13 VQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
               SCOP domains d3dj3d_ D: automated matches                                                                        SCOP domains
               CATH domains 3dj3D00 D:13-111  [code=2.30.42.10, no name defined]                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.eee..eee..eeeee....hhhhh..........eeeeee...hhhhhhh.....ee.ee...hhhhhhhhhhhhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --PDZ  PDB: D:15-111 UniProt: 15-112                                                                PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 3dj3 D  13 VQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
                                    22        32        42        52        62        72        82        92       102

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: PDZ domain-like (299)

Superfamily: PDZ domain-like (299)

Family: automated matches (94)

Protein domain: automated matches (94)

Mouse (Mus musculus) [TaxId: 10090] (12)

1a	d3dj3a_	A:
1b	d3dj3b_	B:
1c	d3dj3c_	C:
1d	d3dj3d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: Pdz3 Domain (191)

Homologous Superfamily: [code=2.30.42.10, no name defined] (191)

Mouse (Mus musculus) (7)

1a	3dj3D00	D:13-111
1b	3dj3A00	A:12-111
1c	3dj3C00	C:12-111
1d	3dj3B00	B:12-112

(no "Pfam Domain" information available for 3DJ3)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (TX1B3_MOUSE | Q9DBG9)

molecular function
	GO:0008013	beta-catenin binding	Interacting selectively and non-covalently with the beta subunit of the catenin complex.
	GO:0008022	protein C-terminus binding	Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007266	Rho protein signal transduction	A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state.
	GO:0016055	Wnt signaling pathway	The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
	GO:0090630	activation of GTPase activity	Any process that initiates the activity of an inactive GTPase through the replacement of GDP by GTP.
	GO:0030178	negative regulation of Wnt signaling pathway	Any process that stops, prevents, or reduces the frequency, rate or extent of the Wnt signaling pathway.
	GO:0008285	negative regulation of cell proliferation	Any process that stops, prevents or reduces the rate or extent of cell proliferation.
	GO:2000009	negative regulation of protein localization to cell surface	Any process that stops, prevents, or reduces the frequency, rate or extent of protein localization to the cell surface.
	GO:0030111	regulation of Wnt signaling pathway	Any process that modulates the frequency, rate or extent of the activity of the Wnt signal transduction pathway.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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(no "Sites" information available for 3dj3)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3dj3)

Biological Units
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	3dj3
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UniProtKB/Swiss-Prot
	TX1B3_MOUSE \| Q9DBG9	:	3diw 3dj1

3diw	C-TERMINAL BETA-CATENIN BOUND TIP-1
3dj1	TIP-1 WILD TYPE

Description

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