3DHR - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE DETERMINATION OF METHEMOGLOBIN FROM PIGEON AT 2 ANGSTROM RESOLUTION (COLUMBA LIVIA)

Authors :   P. Sathya Moorthy, K. Neelagandan, M. Balasubramanian, M. N. Ponnusw

Date :   18 Jun 08 (Deposition) - 30 Jun 09 (Release) - 21 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)
Biol. Unit 3: A,B  (1x)
Biol. Unit 4: C,D  (1x)
Biol. Unit 5: E,F  (1x)
Biol. Unit 6: G,H  (1x)

Keywords :   Avian Hemoglobin, Methemoglobin, Triclinic, Heme, Iron, Metal- Binding, Oxygen Transport, Transport, Oxygen Storage (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Sathya Moorthy, K. Neelagandan, M. Balasubramanian, M. N. Ponnuswamy
Purification, Crystallization And X-Ray Diffraction Studies Of Pigeon Hemoglobin
To Be Published
PubMed: search

Molecule 1 - HEMOGLOBIN SUBUNIT ALPHA-A
	Cell	:	RED BLOOD CELLS (RBC)
	Chains	:	A, C, E, G
	Organism Common	:	ROCK PIGEON
	Organism Scientific	:	COLUMBA LIVIA
	Organism Taxid	:	8932
	Synonym	:	HEMOGLOBIN ALPHA-A CHAIN, ALPHA-A-GLOBIN

Molecule 2 - HEMOGLOBIN SUBUNIT BETA
	Cell	:	RED BLOOD CELLS (RBC)
	Chains	:	B, D, F, H
	Organism Common	:	ROCK PIGEON
	Organism Scientific	:	COLUMBA LIVIA
	Organism Taxid	:	8932
	Synonym	:	HEMOGLOBIN BETA CHAIN, BETA-GLOBIN

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H
Biological Unit 3 (1x)	:	A	B
Biological Unit 4 (1x)	:			C	D
Biological Unit 5 (1x)	:					E	F
Biological Unit 6 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 8)

No.	Name	Count	Type	Full Name
1	HEM	8	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 4 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 6 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:42 , PHE A:43 , HIS A:58 , LYS A:61 , LEU A:83 , HIS A:87 , LEU A:91 , VAL A:93 , ASN A:97 , PHE A:98 , LEU A:101 , LEU A:136 , HOH A:144	BINDING SITE FOR RESIDUE HEM A 142
2	AC2	SOFTWARE	PHE B:41 , PHE B:42 , HIS B:63 , LYS B:66 , SER B:70 , PHE B:71 , LEU B:88 , HIS B:92 , LEU B:96 , VAL B:98 , ASN B:102 , LEU B:106 , LEU B:141 , HOH B:148	BINDING SITE FOR RESIDUE HEM B 147
3	AC3	SOFTWARE	TYR C:42 , PHE C:43 , HIS C:58 , LYS C:61 , LEU C:83 , HIS C:87 , LEU C:91 , VAL C:93 , ASN C:97 , PHE C:98 , LEU C:101 , LEU C:136 , HOH C:144 , HOH C:150	BINDING SITE FOR RESIDUE HEM C 142
4	AC4	SOFTWARE	PHE D:41 , PHE D:42 , HIS D:63 , LYS D:66 , SER D:70 , PHE D:71 , LEU D:88 , HIS D:92 , LEU D:96 , VAL D:98 , ASN D:102 , LEU D:106 , LEU D:141 , HOH D:148	BINDING SITE FOR RESIDUE HEM D 147
5	AC5	SOFTWARE	TYR E:42 , PHE E:43 , HIS E:58 , LYS E:61 , HIS E:87 , LEU E:91 , VAL E:93 , ASN E:97 , PHE E:98 , LEU E:101 , LEU E:136 , HOH E:143	BINDING SITE FOR RESIDUE HEM E 142
6	AC6	SOFTWARE	HIS A:45 , PHE F:41 , PHE F:42 , PHE F:45 , HIS F:63 , LYS F:66 , SER F:70 , PHE F:71 , LEU F:88 , HIS F:92 , LEU F:96 , VAL F:98 , ASN F:102 , PHE F:103 , LEU F:106 , LEU F:141 , HOH F:148	BINDING SITE FOR RESIDUE HEM F 147
7	AC7	SOFTWARE	TYR G:42 , PHE G:43 , HIS G:58 , LYS G:61 , LEU G:86 , HIS G:87 , LEU G:91 , VAL G:93 , ASN G:97 , PHE G:98 , LEU G:101 , LEU G:136 , HOH G:144 , HOH G:168	BINDING SITE FOR RESIDUE HEM G 142
8	AC8	SOFTWARE	HIS C:45 , THR H:38 , PHE H:41 , PHE H:42 , HIS H:63 , SER H:70 , PHE H:71 , HIS H:92 , LEU H:96 , VAL H:98 , ASN H:102 , LEU H:106 , LEU H:141 , HOH H:149 , HOH H:161 , HOH H:164 , HOH H:174	BINDING SITE FOR RESIDUE HEM H 147

(no "SS Bond" information available for 3DHR)

Asymmetric Unit

No.	Residues
1	Val G:1	-	Leu G:2

(no "SAP(SNP)/Variant" information available for 3DHR)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	HBA_COLLI	3-142	4	A:2-141 C:2-141 E:2-141 G:2-141
1	GLOBIN	PS01033	Globin family profile.	HBB_COLLI	4-146	4	B:4-146 D:4-146 F:4-146 H:4-146

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	HBA_COLLI	3-142	2	A:2-141 C:2-141 - -
1	GLOBIN	PS01033	Globin family profile.	HBB_COLLI	4-146	2	B:4-146 D:4-146 - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	HBA_COLLI	3-142	2	- - E:2-141 G:2-141
1	GLOBIN	PS01033	Globin family profile.	HBB_COLLI	4-146	2	- - F:4-146 H:4-146

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	HBA_COLLI	3-142	1	A:2-141 - - -
1	GLOBIN	PS01033	Globin family profile.	HBB_COLLI	4-146	1	B:4-146 - - -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	HBA_COLLI	3-142	1	- C:2-141 - -
1	GLOBIN	PS01033	Globin family profile.	HBB_COLLI	4-146	1	- D:4-146 - -

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	HBA_COLLI	3-142	1	- - E:2-141 -
1	GLOBIN	PS01033	Globin family profile.	HBB_COLLI	4-146	1	- - F:4-146 -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	HBA_COLLI	3-142	1	- - - G:2-141
1	GLOBIN	PS01033	Globin family profile.	HBB_COLLI	4-146	1	- - - H:4-146

(no "Exon" information available for 3DHR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:141
 aligned with HBA_COLLI | P21871 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:141
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141 
            HBA_COLLI     2 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 142
               SCOP domains d3dhra_ A: automated matches                                                                                                                  SCOP domains
               CATH domains 3dhrA00 A:1-141 Globins                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GLOBIN  PDB: A:2-141 UniProt: 3-142                                                                                                          PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dhr A   1 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:145
 aligned with HBB_COLLI | P11342 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141     
            HBB_COLLI     2 HWSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH 146
               SCOP domains d3dhrb_ B: automated matches                                                                                                                      SCOP domains
               CATH domains 3dhrB00 B:2-146 Globins                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --GLOBIN  PDB: B:4-146 UniProt: 4-146                                                                                                             PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dhr B   2 HWSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH 146
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141

Chain C from PDB  Type:PROTEIN  Length:141
 aligned with HBA_COLLI | P21871 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:141
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141 
            HBA_COLLI     2 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 142
               SCOP domains d3dhrc_ C: automated matches                                                                                                                  SCOP domains
               CATH domains 3dhrC00 C:1-141 Globins                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GLOBIN  PDB: C:2-141 UniProt: 3-142                                                                                                          PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dhr C   1 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain D from PDB  Type:PROTEIN  Length:145
 aligned with HBB_COLLI | P11342 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141     
            HBB_COLLI     2 HWSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH 146
               SCOP domains d3dhrd_ D: automated matches                                                                                                                      SCOP domains
               CATH domains 3dhrD00 D:2-146 Globins                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --GLOBIN  PDB: D:4-146 UniProt: 4-146                                                                                                             PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dhr D   2 HWSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH 146
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141

Chain E from PDB  Type:PROTEIN  Length:141
 aligned with HBA_COLLI | P21871 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:141
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141 
            HBA_COLLI     2 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 142
               SCOP domains d3dhre_ E: automated matches                                                                                                                  SCOP domains
               CATH domains 3dhrE00 E:1-141 Globins                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GLOBIN  PDB: E:2-141 UniProt: 3-142                                                                                                          PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dhr E   1 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain F from PDB  Type:PROTEIN  Length:145
 aligned with HBB_COLLI | P11342 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141     
            HBB_COLLI     2 HWSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH 146
               SCOP domains d3dhrf_ F: automated matches                                                                                                                      SCOP domains
               CATH domains 3dhrF00 F:2-146 Globins                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --GLOBIN  PDB: F:4-146 UniProt: 4-146                                                                                                             PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dhr F   2 HWSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH 146
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141

Chain G from PDB  Type:PROTEIN  Length:141
 aligned with HBA_COLLI | P21871 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:141
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141 
            HBA_COLLI     2 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 142
               SCOP domains d3dhrg_ G: automated matches                                                                                                                  SCOP domains
               CATH domains 3dhrG00 G:1-141 Globins                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GLOBIN  PDB: G:2-141 UniProt: 3-142                                                                                                          PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dhr G   1 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain H from PDB  Type:PROTEIN  Length:145
 aligned with HBB_COLLI | P11342 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141     
            HBB_COLLI     2 HWSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH 146
               SCOP domains d3dhrh_ H: automated matches                                                                                                                      SCOP domains
               CATH domains 3dhrH00 H:2-146 Globins                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --GLOBIN  PDB: H:4-146 UniProt: 4-146                                                                                                             PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dhr H   2 HWSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH 146
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Globin-like (1351)

Superfamily: Globin-like (1308)

Family: Globins (1157)

Protein domain: automated matches (99)

Domestic pigeon (Columba livia) [TaxId: 8932] (2)

1a	d3dhra_	A:
1b	d3dhrg_	G:
1c	d3dhrh_	H:
1d	d3dhrb_	B:
1e	d3dhrc_	C:
1f	d3dhrd_	D:
1g	d3dhre_	E:
1h	d3dhrf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Globin-like (786)

Homologous Superfamily: Globins (743)

Rock pigeon (Columba livia) (1)

1a	3dhrB00	B:2-146
1b	3dhrD00	D:2-146
1c	3dhrF00	F:2-146
1d	3dhrH00	H:2-146
1e	3dhrA00	A:1-141
1f	3dhrC00	C:1-141
1g	3dhrE00	E:1-141
1h	3dhrG00	G:1-141

(no "Pfam Domain" information available for 3DHR)

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G (HBA_COLLI | P21871)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005833	hemoglobin complex	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

Chain B,D,F,H (HBB_COLLI | P11342)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005833	hemoglobin complex	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (8, 8)

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Cis Peptide Bonds (1, 1)

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