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Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF IL-22/IL-22R1

Authors :   B. C. Jones, N. J. Logsdon, M. R. Walter

Date :   13 Jun 08 (Deposition) - 15 Jul 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : L,M,R,S
Biol. Unit 1: L,R  (1x)
Biol. Unit 2: M,S  (1x)
Biol. Unit 3: L,M,R,S  (1x)

Keywords :   Il-22, Il-22R1, Cytokine, Receptor, Signaling Molecule, Glycoprotein, Secreted, Membrane, Transmembrane, Cytokine-Signaling Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. C. Jones, N. J. Logsdon, M. R. Walter
Structure Of Il-22 Bound To Its High-Affinity Il-22R1 Chain
Structure V. 16 1333 2008
PubMed-ID: 18599299 | Reference-DOI: 10.1016/J.STR.2008.06.005

Molecule 1 - INTERLEUKIN-22
	Chains	:	L, M
	Fragment	:	UNP RESIDUES 39-179
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	IL-22, IL-10-RELATED T-CELL-DERIVED-INDUCIBLE FACTOR, IL- TIF

Molecule 2 - INTERLEUKIN-22 RECEPTOR SUBUNIT ALPHA-1
	Chains	:	R, S
	Fragment	:	UNP RESIDUES 19-225
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	IL-22R-ALPHA-1, CYTOKINE RECEPTOR FAMILY 2 MEMBER 9, CRF2-9

		1	2	3	4
Asymmetric Unit	:	L	M	R	S
Biological Unit 1 (1x)	:	L		R
Biological Unit 2 (1x)	:		M		S
Biological Unit 3 (1x)	:	L	M	R	S

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (8, 22)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	BMA	1	Ligand/Ion	BETA-D-MANNOSE
3	CL	3	Ligand/Ion	CHLORIDE ION
4	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
5	IUM	1	Ligand/Ion	URANYL (VI) ION
6	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	U1	11	Ligand/Ion	URANIUM ATOM

Biological Unit 1 (4, 5)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	BMA	1	Ligand/Ion	BETA-D-MANNOSE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
5	IUM	-1	Ligand/Ion	URANYL (VI) ION
6	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	U1	-1	Ligand/Ion	URANIUM ATOM

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	BMA	-1	Ligand/Ion	BETA-D-MANNOSE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	FUC	-1	Ligand/Ion	ALPHA-L-FUCOSE
5	IUM	1	Ligand/Ion	URANYL (VI) ION
6	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	-1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	U1	-1	Ligand/Ion	URANIUM ATOM

Biological Unit 3 (6, 8)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	BMA	1	Ligand/Ion	BETA-D-MANNOSE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
5	IUM	1	Ligand/Ion	URANYL (VI) ION
6	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	U1	-1	Ligand/Ion	URANIUM ATOM

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL R:171 , ASN R:172 , TYR R:175 , NAG R:228 , FUC R:231	BINDING SITE FOR RESIDUE NAG R 227
02	AC2	SOFTWARE	TYR M:51 , NAG R:227 , BMA R:229 , HOH R:272	BINDING SITE FOR RESIDUE NAG R 228
03	AC3	SOFTWARE	NAG R:228 , MAN R:230	BINDING SITE FOR RESIDUE BMA R 229
04	AC4	SOFTWARE	ARG M:55 , TYR M:114 , BMA R:229 , HOH R:272	BINDING SITE FOR RESIDUE MAN R 230
05	AC5	SOFTWARE	TYR M:51 , TYR R:175 , GLY R:190 , THR R:192 , PHE R:197 , NAG R:227	BINDING SITE FOR RESIDUE FUC R 231
06	AC6	SOFTWARE	THR R:142 , LEU R:156 , GLU R:157 , ARG R:184 , HOH R:259	BINDING SITE FOR RESIDUE CL R 3
07	AC7	SOFTWARE	ACT M:2 , HIS M:140 , ACT M:180 , ASP S:23 , GLU S:46 , ARG S:104	BINDING SITE FOR RESIDUE IUM M 1
08	AC8	SOFTWARE	IUM M:1 , ACT M:2 , HIS M:81	BINDING SITE FOR RESIDUE ACT M 180
09	AC9	SOFTWARE	IUM M:1 , HIS M:140 , ARG M:143 , ACT M:180 , GLU S:19 , ASP S:20 , ASP S:23	BINDING SITE FOR RESIDUE ACT M 2
10	BC1	SOFTWARE	ARG S:76 , ASP S:80	BINDING SITE FOR RESIDUE CL S 1
11	BC2	SOFTWARE	THR S:142 , LEU S:156 , GLU S:157 , ARG S:184	BINDING SITE FOR RESIDUE CL S 2
12	BC3	SOFTWARE	TYR L:90	BINDING SITE FOR RESIDUE U1 L 8
13	BC4	SOFTWARE	GLU L:101 , GLU L:102	BINDING SITE FOR RESIDUE U1 L 11
14	BC5	SOFTWARE	ASP R:80 , HOH R:242 , HOH R:243	BINDING SITE FOR RESIDUE U1 R 2
15	BC6	SOFTWARE	ASP R:224	BINDING SITE FOR RESIDUE U1 R 4
16	BC7	SOFTWARE	GLU L:77 , ASP R:87 , GLU R:90 , ARG S:173	BINDING SITE FOR RESIDUE U1 R 6
17	BC8	SOFTWARE	ASP R:23	BINDING SITE FOR RESIDUE U1 R 7
18	BC9	SOFTWARE	TYR M:90 , ASP M:138	BINDING SITE FOR RESIDUE U1 M 9
19	CC1	SOFTWARE	ASP M:43 , ARG M:128 , HOH M:187 , HOH M:223	BINDING SITE FOR RESIDUE U1 M 10
20	CC2	SOFTWARE	GLU M:101 , GLU M:102 , HOH M:190	BINDING SITE FOR RESIDUE U1 M 12
21	CC3	SOFTWARE	ASP S:80 , HOH S:271 , HOH S:289	BINDING SITE FOR RESIDUE U1 S 3
22	CC4	SOFTWARE	GLU M:77 , ASP S:87 , GLU S:90	BINDING SITE FOR RESIDUE U1 S 5

Asymmetric Unit

No.	Residues
1	L:40	-	L:132
2	L:89	-	L:178
3	M:40	-	M:132
4	M:89	-	M:178
5	R:71	-	R:79
6	R:128	-	R:217
7	S:71	-	S:79
8	S:128	-	S:217

Asymmetric Unit

No.	Residues
1	Gln L:112	-	Pro L:113

Asymmetric Unit (5, 10)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_039699	S	130	P	I22R1_HUMAN	Polymorphism	34900099	R/S	S	130	P
2	UniProt	VAR_013078	S	158	G	IL22_HUMAN	Polymorphism	2227507	L/M	S	158	G
3	UniProt	VAR_039700	V	205	I	I22R1_HUMAN	Polymorphism	16829204	R/S	V	205	I
4	UniProt	VAR_039701	A	209	S	I22R1_HUMAN	Polymorphism	34379702	R/S	A	209	S
5	UniProt	VAR_039702	L	222	P	I22R1_HUMAN	Polymorphism	34782294	R/S	L	222	P

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_039699	S	130	P	I22R1_HUMAN	Polymorphism	34900099	R	S	130	P
2	UniProt	VAR_013078	S	158	G	IL22_HUMAN	Polymorphism	2227507	L	S	158	G
3	UniProt	VAR_039700	V	205	I	I22R1_HUMAN	Polymorphism	16829204	R	V	205	I
4	UniProt	VAR_039701	A	209	S	I22R1_HUMAN	Polymorphism	34379702	R	A	209	S
5	UniProt	VAR_039702	L	222	P	I22R1_HUMAN	Polymorphism	34782294	R	L	222	P

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_039699	S	130	P	I22R1_HUMAN	Polymorphism	34900099	S	S	130	P
2	UniProt	VAR_013078	S	158	G	IL22_HUMAN	Polymorphism	2227507	M	S	158	G
3	UniProt	VAR_039700	V	205	I	I22R1_HUMAN	Polymorphism	16829204	S	V	205	I
4	UniProt	VAR_039701	A	209	S	I22R1_HUMAN	Polymorphism	34379702	S	A	209	S
5	UniProt	VAR_039702	L	222	P	I22R1_HUMAN	Polymorphism	34782294	S	L	222	P

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (5, 10)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_039699	S	130	P	I22R1_HUMAN	Polymorphism	34900099	R/S	S	130	P
2	UniProt	VAR_013078	S	158	G	IL22_HUMAN	Polymorphism	2227507	L/M	S	158	G
3	UniProt	VAR_039700	V	205	I	I22R1_HUMAN	Polymorphism	16829204	R/S	V	205	I
4	UniProt	VAR_039701	A	209	S	I22R1_HUMAN	Polymorphism	34379702	R/S	A	209	S
5	UniProt	VAR_039702	L	222	P	I22R1_HUMAN	Polymorphism	34782294	R/S	L	222	P

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	INTERLEUKIN_10	PS00520	Interleukin-10 family signature.	IL22_HUMAN	84-104	2	L:84-104 M:84-104

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	INTERLEUKIN_10	PS00520	Interleukin-10 family signature.	IL22_HUMAN	84-104	1	L:84-104 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	INTERLEUKIN_10	PS00520	Interleukin-10 family signature.	IL22_HUMAN	84-104	1	- M:84-104

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	INTERLEUKIN_10	PS00520	Interleukin-10 family signature.	IL22_HUMAN	84-104	2	L:84-104 M:84-104

Asymmetric Unit (5, 10)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000328087	1	ENSE00001303127	chr12:68647284-68647043	242	IL22_HUMAN	1-62	62	2	L:39-62 M:39-62	24 24
1.2	ENST00000328087	2	ENSE00000920698	chr12:68646609-68646544	66	IL22_HUMAN	63-84	22	2	L:63-84 M:63-84	22 22
1.3	ENST00000328087	3	ENSE00000920697	chr12:68646427-68646284	144	IL22_HUMAN	85-132	48	2	L:85-132 M:85-132	48 48
1.4	ENST00000328087	4	ENSE00001100627	chr12:68645358-68645293	66	IL22_HUMAN	133-154	22	2	L:133-154 M:133-154	22 22
1.5	ENST00000328087	5	ENSE00001311233	chr12:68642656-68642025	632	IL22_HUMAN	155-179	25	2	L:155-179 M:155-179	25 25

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain L from PDB  Type:PROTEIN  Length:141
 aligned with IL22_HUMAN | Q9GZX6 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:141
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178 
           IL22_HUMAN    39 HCRLDKSNFQQPYITNRTFMLAKEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDRFQPYMQEVVPFLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI 179
               SCOP domains d3dgcl_ L: automated matches                                                                                                                  SCOP domains
               CATH domains 3dgcL00 L:39-179  [code=1.20.1250.10, no name defined]                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.hhhhhhhhhhhhhhhhhhh........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------G--------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------INTERLEUKIN_10       --------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: L:39-62  Exon 1.2  PDB: L:63-84Exon 1.3  PDB: L:85-132 UniProt: 85-132         Exon 1.4              Exon 1.5  PDB: L:155-179  Transcript 1
                 3dgc L  39 HCRLDKSNFQQPYITNRTFMLAKEASLADQNTDVRLIGEKLFHGVSMSERCYLMKQVLQFTLEEVLFPQSDRFQPYMQEVVPFLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI 179
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178

Chain M from PDB  Type:PROTEIN  Length:141
 aligned with IL22_HUMAN | Q9GZX6 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:141
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178 
           IL22_HUMAN    39 HCRLDKSNFQQPYITNRTFMLAKEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDRFQPYMQEVVPFLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI 179
               SCOP domains d3dgcm_ M: automated matches                                                                                                                  SCOP domains
               CATH domains 3dgcM00 M:39-179  [code=1.20.1250.10, no name defined]                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.hhhhhhhhhhhhhhhhhhh........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------G--------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------INTERLEUKIN_10       --------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: M:39-62  Exon 1.2  PDB: M:63-84Exon 1.3  PDB: M:85-132 UniProt: 85-132         Exon 1.4              Exon 1.5  PDB: M:155-179  Transcript 1
                 3dgc M  39 HCRLDKSNFQQPYITNRTFMLAKEASLADQNTDVRLIGEKLFHGVSMSERCYLMKQVLQFTLEEVLFPQSDRFQPYMQEVVPFLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI 179
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178

Chain R from PDB  Type:PROTEIN  Length:202
 aligned with I22R1_HUMAN | Q8N6P7 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:202
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222  
          I22R1_HUMAN    23 DLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMICVPTWAKESAPYMCRVKTLPD 224
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeeeeeee........eeeeeeee......ee..........eee...........eeeeeeee.....eeeee....hhhhhh.....eeeeee....eeeeee..eeeee.....eeehhhhh...eeeeeeeee..eeeeeee...eeee.......eeeeeeeeeehhhhee...eeeeee.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------P--------------------------------------------------------------------------I---S------------P-- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dgc R  23 DLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSCDLTVETGDLQELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMICVPTWAKESAPYMCRVKTLPD 224
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Chain S from PDB  Type:PROTEIN  Length:207
 aligned with I22R1_HUMAN | Q8N6P7 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:207
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       
          I22R1_HUMAN    19 EDPSDLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMICVPTWAKESAPYMCRVKTLPDR 225
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.eeeeeeee..eeeeeee.........eeeeeeee......ee..........eee...........eeeeeeee.....eeeee....hhhhhh......eeeee....eeeee...eeeee.....eeehhhhh...eeeeeeeee..eeeeeee...eeee.......eeeeeeeeeehhhhee...eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------P--------------------------------------------------------------------------I---S------------P--- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dgc S  19 EDPSDLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSCDLTVETGDLQELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMICVPTWAKESAPYMCRVKTLPDR 225
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: 4-helical cytokines (168)

Superfamily: 4-helical cytokines (168)

Family: Interferons/interleukin-10 (IL-10) (41)

Protein domain: automated matches (5)

Human (Homo sapiens) [TaxId: 9606] (4)

1a	d3dgcl_	L:
1b	d3dgcm_	M:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Growth Hormone; Chain: A; (136)

Homologous Superfamily: [code=1.20.1250.10, no name defined] (130)

Human (Homo sapiens) (110)

1a	3dgcL00	L:39-179
1b	3dgcM00	M:39-179

(no "Pfam Domain" information available for 3DGC)

Asymmetric Unit(hide GO term definitions)

Chain L,M (IL22_HUMAN | Q9GZX6)

molecular function
	GO:0005125	cytokine activity	Functions to control the survival, growth, differentiation and effector function of tissues and cells.
	GO:0045518	interleukin-22 receptor binding	Interacting selectively and non-covalently with the interleukin-22 receptor.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006953	acute-phase response	An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
	GO:0007267	cell-cell signaling	Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
	GO:0006955	immune response	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
	GO:0006954	inflammatory response	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
	GO:0046427	positive regulation of JAK-STAT cascade	Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity.
	GO:0051384	response to glucocorticoid	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain R,S (I22R1_HUMAN | Q8N6P7)

molecular function
	GO:0004904	interferon receptor activity	Combining with an interferon and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
	GO:0042015	interleukin-20 binding	Interacting selectively and non-covalently with interleukin-20.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
	GO:0019221	cytokine-mediated signaling pathway	A series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
	GO:0050829	defense response to Gram-negative bacterium	Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	3dgc
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	I22R1_HUMAN \| Q8N6P7	:	3dlq
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(no "Related Entries Specified in the PDB File" available for 3DGC)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 22)

Sites (22, 22)

SS Bonds (8, 8)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (5, 10)

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Exons (5, 10)

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Related Entries Specified in the PDB File