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(-) Description

Title :  CRYSTAL STRUCTURE OF SAV_2001 PROTEIN FROM STREPTOMYCES AVERMITILIS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SVR107.
 
Authors :  F. Forouhar, H. Neely, J. Seetharaman, H. Janjua, Y. Fang, R. Xiao, K. Cunningham, L. -C. Ma, L. A. Owen, C. X. Chen, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  10 Jun 08  (Deposition) - 05 Aug 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Forouhar, H. Neely, J. Seetharaman, H. Janjua, Y. Fang, R. Xiao, K. Cunningham, L. -C. Ma, L. A. Owen, C. X. Chen, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Sav_2001 Protein From Streptomyces Avermitilis, Northeast Structural Genomics Consortium Target Svr107.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SAV_2001
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidBL21
    Expression System StrainBL21(DE3)+MAGIC
    Expression System Vector TypePET21
    GeneSAV2001, SAV_2001
    Organism ScientificSTREPTOMYCES AVERMITILIS
    Organism Taxid33903
    StrainMA-4680

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)AB      
Biological Unit 2 (1x)  CD    
Biological Unit 3 (1x)    EF  
Biological Unit 4 (1x)      GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3DEX)

(-) Sites  (0, 0)

(no "Site" information available for 3DEX)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:20 -A:23

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3DEX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DEX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DEX)

(-) Exons   (0, 0)

(no "Exon" information available for 3DEX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:79
 aligned with Q82LK9_STRAW | Q82LK9 from UniProtKB/TrEMBL  Length:99

    Alignment length:79
                                    20        30        40        50        60        70        80         
          Q82LK9_STRAW   11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVA 89
               SCOP domains d3dexa_ A: automated matches                                                    SCOP domains
               CATH domains 3dexA00 A:11-89 Glutaredoxin                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  3dex A 11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVA 89
                                    20        30        40        50        60        70        80         

Chain B from PDB  Type:PROTEIN  Length:80
 aligned with Q82LK9_STRAW | Q82LK9 from UniProtKB/TrEMBL  Length:99

    Alignment length:80
                                    22        32        42        52        62        72        82        92
          Q82LK9_STRAW   13 HRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVAPEK 92
               SCOP domains d3dexb_ B: automated matches                                                     SCOP domains
               CATH domains 3dexB00 B:13-92 Glutaredoxin                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhhhhh.....eeeeeee....eeeee..eeeeehhhhh..hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3dex B 13 HRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVAPEK 92
                                    22        32        42        52        62        72        82        92

Chain C from PDB  Type:PROTEIN  Length:77
 aligned with Q82LK9_STRAW | Q82LK9 from UniProtKB/TrEMBL  Length:99

    Alignment length:77
                                    21        31        41        51        61        71        81       
          Q82LK9_STRAW   12 THRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRV 88
               SCOP domains d3dexc_ C: automated matches                                                  SCOP domains
               CATH domains 3dexC00 C:12-88 Glutaredoxin                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  3dex C 12 THRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRV 88
                                    21        31        41        51        61        71        81       

Chain D from PDB  Type:PROTEIN  Length:81
 aligned with Q82LK9_STRAW | Q82LK9 from UniProtKB/TrEMBL  Length:99

    Alignment length:81
                                    21        31        41        51        61        71        81        91 
          Q82LK9_STRAW   12 THRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVAPEK 92
               SCOP domains d3dexd_ D: automated matches                                                      SCOP domains
               CATH domains 3dexD00 D:12-92 Glutaredoxin                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh..hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  3dex D 12 THRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVAPEK 92
                                    21        31        41        51        61        71        81        91 

Chain E from PDB  Type:PROTEIN  Length:79
 aligned with Q82LK9_STRAW | Q82LK9 from UniProtKB/TrEMBL  Length:99

    Alignment length:79
                                    20        30        40        50        60        70        80         
          Q82LK9_STRAW   11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVA 89
               SCOP domains d3dexe_ E: automated matches                                                    SCOP domains
               CATH domains 3dexE00 E:11-89 Glutaredoxin                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh..hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  3dex E 11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVA 89
                                    20        30        40        50        60        70        80         

Chain F from PDB  Type:PROTEIN  Length:79
 aligned with Q82LK9_STRAW | Q82LK9 from UniProtKB/TrEMBL  Length:99

    Alignment length:79
                                    20        30        40        50        60        70        80         
          Q82LK9_STRAW   11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVA 89
               SCOP domains d3dexf_ F: automated matches                                                    SCOP domains
               CATH domains 3dexF00 F:11-89 Glutaredoxin                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh..hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  3dex F 11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVA 89
                                    20        30        40        50        60        70        80         

Chain G from PDB  Type:PROTEIN  Length:77
 aligned with Q82LK9_STRAW | Q82LK9 from UniProtKB/TrEMBL  Length:99

    Alignment length:77
                                    21        31        41        51        61        71        81       
          Q82LK9_STRAW   12 THRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRV 88
               SCOP domains d3dexg_ G: automated matches                                                  SCOP domains
               CATH domains 3dexG00 G:12-88 Glutaredoxin                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  3dex G 12 THRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRV 88
                                    21        31        41        51        61        71        81       

Chain H from PDB  Type:PROTEIN  Length:83
 aligned with Q82LK9_STRAW | Q82LK9 from UniProtKB/TrEMBL  Length:99

    Alignment length:83
                                    19        29        39        49        59        69        79        89   
          Q82LK9_STRAW   10 PHTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVAPEK 92
               SCOP domains d3dexh_ H: automated matches                                                        SCOP domains
               CATH domains 3dexH00 H:10-92 Glutaredoxin                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeee....eeeee..eeeeehhhhh..hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  3dex H 10 PHTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVAPEK 92
                                    19        29        39        49        59        69        79        89   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DEX)

(-) Gene Ontology  (0, 0)

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