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(-) Description

Title :  CRYSTAL STRUCTURE OF A CBS DOMAIN-CONTAINING PROTEIN IN COMPLEX WITH AMP (SSO3205) FROM SULFOLOBUS SOLFATARICUS AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  05 Jun 08  (Deposition) - 24 Jun 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Amp-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Cbs Domain-Containing Protein In Complex With Amp (Np_344512. 1) From Sulfolobus Solfataricus At 1. 80 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CBS DOMAIN-CONTAINING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Vector Type: PLASMID
    Gene: NP_344512.1, SSO3205
    Organism Common: ARCHAEA
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2MSE9Mod. Amino AcidSELENOMETHIONINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:144 , GLN A:148 , PHE A:168 , ARG A:169 , ARG A:170 , PRO A:172 , THR A:256 , ASP A:259 , HOH A:287 , HOH A:315 , HOH A:321 , HOH A:342 , HOH A:357 , HOH A:481 , HOH A:490BINDING SITE FOR RESIDUE AMP A 278
2AC2SOFTWAREARG A:34 , LEU A:45 , THR A:47 , PHE A:105 , GLY A:106 , SER A:107 , ARG A:169 , HOH A:302BINDING SITE FOR RESIDUE PEG A 279

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DDJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3DDJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3DDJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:279
 aligned with Q97U20_SULSO | Q97U20 from UniProtKB/TrEMBL  Length:277

    Alignment length:282
                                  1                                                                                                                                                                                                                                                                                   
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274  
         Q97U20_SULSO     - ------MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVMEKFKEK 276
               SCOP domains ------d3ddja2 A:1-135 Uncharacterized protein SSO3205                                                                                        d3ddja1 A:136-276 Uncharacterized protein SSO3205                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhh.ee...ee....hhhhhhhhhhhhhh.eeeee...eeeeeehhhhhhhhh...---.hhhhhhhhhh.hhhhh.ee....ee...hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhhhh....hhhhhh......ee...hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhhhhhhhh.hhhhhh.hhhhhh...........hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ddj A  -5 NLYFQGmNIETLmIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYC---CSQGDLYHISTTPIIDYmTPNPVTVYNTSDEFTAINImVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIFPVKVFmSTKVQTIYKEVRLDQAVKLmLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVmVTNLVTIDELASVNRAAAEmIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVmEKFKEK 276
                                  |  4  |     14        24        34        44        54    |   64        74     |  84        94     | 104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264     | 274  
                                  1-MSE 7-MSE                                              59  63               80-MSE             100-MSE                                    143-MSE             163-MSE                                            214-MSE             234-MSE                             270-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DDJ)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q97U20_SULSO | Q97U20)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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