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(-) Description

Title :  CRYSTAL STRUCTURE OF ACETYLTRANSFERASE OF GNAT FAMILY (NP_373092.1) FROM STAPHYLOCOCCUS AUREUS MU50 AT 2.20 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics, Joint Center For Struct Genomics (Jcsg)
Date :  23 May 08  (Deposition) - 28 Oct 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Np_373092. 1, Acetyltransferase Of Gnat Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Acetyltransferase (Gnat) Family, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Acetyltransferase Of Gnat Family (Np_373092. 1) From Staphylococcus Aureus Mu50 At 2. 20 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYLTRANSFERASE OF GNAT FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_373092.1, SAV2568
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50
    Organism Taxid: 158878

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 21)

Asymmetric Unit (4, 21)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION
3EDO11Ligand/Ion1,2-ETHANEDIOL
4MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3EDO3Ligand/Ion1,2-ETHANEDIOL
4MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 12)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3EDO8Ligand/Ion1,2-ETHANEDIOL
4MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:33 , ASP A:35 , ASP A:36 , ASN B:91 , HOH B:345BINDING SITE FOR RESIDUE CA A 163
02AC2SOFTWARETYR A:8 , GLU A:41 , ILE A:43 , GLU A:44 , HOH A:215 , HOH A:216BINDING SITE FOR RESIDUE ACT A 164
03AC3SOFTWAREILE A:23 , PHE A:28 , PHE A:84 , VAL A:85 , ARG A:90 , EDO A:168BINDING SITE FOR RESIDUE ACT A 165
04AC4SOFTWAREMSE A:83 , THR A:118 , ALA A:125 , TYR A:129 , EDO A:167 , EDO A:168 , HOH A:261BINDING SITE FOR RESIDUE EDO A 166
05AC5SOFTWARELEU A:80 , LYS A:82 , MSE A:83 , GLY A:117 , TYR A:129 , EDO A:166BINDING SITE FOR RESIDUE EDO A 167
06AC6SOFTWAREMSE A:83 , ALA A:125 , ACT A:165 , EDO A:166 , HOH A:171BINDING SITE FOR RESIDUE EDO A 168
07AC7SOFTWAREMSE B:83 , PHE B:84 , THR B:118 , TYR B:129 , EDO B:168 , EDO B:169BINDING SITE FOR RESIDUE ACT B 163
08AC8SOFTWAREGLU B:15 , GLU B:18 , PHE B:19 , EDO B:170BINDING SITE FOR RESIDUE EDO B 164
09AC9SOFTWARELYS A:138 , ILE B:64 , ASP B:86 , HOH B:176 , HOH B:180BINDING SITE FOR RESIDUE EDO B 165
10BC1SOFTWAREARG B:90 , LYS B:93 , GLY B:95 , LYS B:96BINDING SITE FOR RESIDUE EDO B 166
11BC2SOFTWAREPHE B:84 , VAL B:85 , ARG B:90 , EDO B:168 , HOH B:207BINDING SITE FOR RESIDUE EDO B 167
12BC3SOFTWAREMSE B:83 , ALA B:125 , ACT B:163 , EDO B:167BINDING SITE FOR RESIDUE EDO B 168
13BC4SOFTWAREGLN B:24 , PHE B:84 , LEU B:149 , ASP B:152 , ACT B:163BINDING SITE FOR RESIDUE EDO B 169
14BC5SOFTWAREPHE B:19 , SER B:22 , ILE B:23 , ASP B:86 , LYS B:87 , EDO B:164 , HOH B:239BINDING SITE FOR RESIDUE EDO B 170
15BC6SOFTWAREPRO B:38 , ASP B:39 , ASN B:46 , SER B:144 , SER B:145 , PHE B:146BINDING SITE FOR RESIDUE EDO B 171

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3D8P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3D8P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3D8P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3D8P)

(-) Exons   (0, 0)

(no "Exon" information available for 3D8P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with A0A0H3JTS0_S | A0A0H3JTS0 from UniProtKB/TrEMBL  Length:162

    Alignment length:160
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
         A0A0H3JTS0_S     2 AINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLK 161
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3d8pA00 A:2-161  [code=3.40.630.30, no name defined]                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.....eeeeee.....eeeeeeeee....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhh..eeehhhhh.......--..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d8p A   2 AINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNmSALKKmFVDKGYRNLKIGKKLLDKVImTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKL--DNRFYYRNLK 161
                                    11        21        31        41        51        61        71     |  81 |      91       101  |    111       121       131       141       | -|      161
                                                                                                      77-MSE |                  104-MSE                                      149  |         
                                                                                                            83-MSE                                                              152         


Chain B from PDB  Type:PROTEIN  Length:160
 aligned with A0A0H3JTS0_S | A0A0H3JTS0 from UniProtKB/TrEMBL  Length:162

    Alignment length:160
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
         A0A0H3JTS0_S     2 AINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLK 161
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3d8pB00 B:2-161  [code=3.40.630.30, no name defined]                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.....eeeeee.....eeeeeeeee....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhh...eeehhhhh...........eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d8p B   2 AINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNmSALKKmFVDKGYRNLKIGKKLLDKVImTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLK 161
                                    11        21        31        41        51        61        71     |  81 |      91       101  |    111       121       131       141       151       161
                                                                                                      77-MSE |                  104-MSE                                                     
                                                                                                            83-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3D8P)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3D8P)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3D8P)

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