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(-) Description

Title :  SCO6650, A 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE HOMOLOG FROM STREPTOMYCES COELICOLOR
 
Authors :  J. E. Spoonamore, S. A. Roberts, A. Heroux, V. Bandarian
Date :  21 May 08  (Deposition) - 21 Oct 08  (Release) - 28 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  T-Fold, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. E. Spoonamore, S. A. Roberts, A. Heroux, V. Bandarian
Structure Of A 6-Pyruvoyltetrahydropterin Synthase Homolog From Streptomyces Coelicolor.
Acta Crystallogr. , Sect. F V. 64 875 2008
PubMed-ID: 18931427  |  Reference-DOI: 10.1107/S1744309108027048

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN SCO6650
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLAMID
    Gene: SCO6650
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 1902
    Strain: A(3)2

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric/Biological Unit (3, 17)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2MSE12Mod. Amino AcidSELENOMETHIONINE
3NA2Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:109 , GLN E:25BINDING SITE FOR RESIDUE NA A 133
2AC2SOFTWAREASN D:81 , ASN E:47BINDING SITE FOR RESIDUE CL D 133
3AC3SOFTWAREGLN A:25 , ARG E:109 , LEU E:111BINDING SITE FOR RESIDUE NA A 134
4AC4SOFTWAREASN A:47 , ASN B:81BINDING SITE FOR RESIDUE CL B 133
5AC5SOFTWAREARG A:17 , ASN A:81 , ASN F:47BINDING SITE FOR RESIDUE CL A 135

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3D7J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3D7J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3D7J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3D7J)

(-) Exons   (0, 0)

(no "Exon" information available for 3D7J)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with O86696_STRCO | O86696 from UniProtKB/TrEMBL  Length:132

    Alignment length:134
                              1                                                                                                                                   
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128    
         O86696_STRCO     - --MFSITVRDHIMIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeee...hhhhhhhhh.eeeeeeeeeeeee..........hhhhhhhhhhhhhhh...ee.hhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhh.eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d7j A  -1 SHmFSITVRDHImIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
                              |      8  |     18        28        38        48        58        68        78        88        98       108       118       128    
                              |        11-MSE                                                                                                                     
                              1-MSE                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:134
 aligned with O86696_STRCO | O86696 from UniProtKB/TrEMBL  Length:132

    Alignment length:134
                              1                                                                                                                                   
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128    
         O86696_STRCO     - --MFSITVRDHIMIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeee...hhhhhhhhh.eeeeeeeeeeeee..........hhhhhhhhhhhhhhh...ee.hhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhh.eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d7j B  -1 SHmFSITVRDHImIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
                              |      8  |     18        28        38        48        58        68        78        88        98       108       118       128    
                              1-MSE    11-MSE                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:135
 aligned with O86696_STRCO | O86696 from UniProtKB/TrEMBL  Length:132

    Alignment length:135
                               1                                                                                                                                   
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127     
         O86696_STRCO     - ---MFSITVRDHIMIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3d7jC00 C:-2-132  [code=3.30.479.10, no name defined]                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeee...hhhhhhhhh.eeeeeeeeeeeee..........hhhhhhhhhhhhhhh....hhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhh.eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d7j C  -2 GSHmFSITVRDHImIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
                               |     7   |    17        27        37        47        57        67        77        87        97       107       117       127     
                               1-MSE    11-MSE                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:134
 aligned with O86696_STRCO | O86696 from UniProtKB/TrEMBL  Length:132

    Alignment length:134
                              1                                                                                                                                   
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128    
         O86696_STRCO     - --MFSITVRDHIMIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeee...hhhhhhhhh.eeeeeeeeeeeee..........hhhhhhhhhhhhhhh...ee.hhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhh.eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d7j D  -1 SHmFSITVRDHImIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
                              |      8  |     18        28        38        48        58        68        78        88        98       108       118       128    
                              1-MSE    11-MSE                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:134
 aligned with O86696_STRCO | O86696 from UniProtKB/TrEMBL  Length:132

    Alignment length:134
                              1                                                                                                                                   
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128    
         O86696_STRCO     - --MFSITVRDHIMIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeee...hhhhhhhhh.eeeeeeeeeeeee..........hhhhhhhhhhhhhhh...ee.hhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhh.eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d7j E  -1 SHmFSITVRDHImIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
                              |      8  |     18        28        38        48        58        68        78        88        98       108       118       128    
                              1-MSE    11-MSE                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:135
 aligned with O86696_STRCO | O86696 from UniProtKB/TrEMBL  Length:132

    Alignment length:135
                               1                                                                                                                                   
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127     
         O86696_STRCO     - ---MFSITVRDHIMIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3d7jF00 F:-2-132  [code=3.30.479.10, no name defined]                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeee...hhhhhhhhh.eeeeeeeeeeeee..........hhhhhhhhhhhhhhh...ee.hhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhh.eeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d7j F  -2 GSHmFSITVRDHImIAHSFRGDVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYERAL 132
                               |     7   |    17        27        37        47        57        67        77        87        97       107       117       127     
                               1-MSE    11-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3D7J)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3D7J)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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