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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE GLUCAN SYNTHESIS REGULATOR OF SMI1/KNR4 FAMILY (BF1740) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.45 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 May 08  (Deposition) - 15 Jul 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Putative Glucan Synthesis Regulator Of Smi1/Knr4 Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Glucan Synthesis Regulator Of Smi1/Knr4 Family (Yp_211376. 1) From Bacteroides Fragilis Nctc 9343 At 1. 45 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE GLUCAN SYNTHESIS REGULATOR OF SMI1/KNR4 FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Vector Type: PLASMID
    Gene: YP_211376.1, BF1740
    Organism Scientific: BACTEROIDES FRAGILIS NCTC 9343
    Organism Taxid: 272559

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2GOL3Ligand/IonGLYCEROL
3MSE4Mod. Amino AcidSELENOMETHIONINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:73 , LEU A:103 , GLY A:104 , ASP A:105 , LEU A:106BINDING SITE FOR RESIDUE ACT A 144
2AC2SOFTWARELEU B:103 , GLY B:104 , ASP B:105 , LEU B:106BINDING SITE FOR RESIDUE ACT B 144
3AC3SOFTWAREGLU B:23 , THR B:28 , THR B:29BINDING SITE FOR RESIDUE ACT B 145
4AC4SOFTWAREASP B:12 , LEU B:26 , LYS B:76 , TRP B:79 , LEU B:93BINDING SITE FOR RESIDUE GOL B 146
5AC5SOFTWAREASP A:86 , LYS B:47 , TYR B:52BINDING SITE FOR RESIDUE GOL B 147
6AC6SOFTWARELYS A:47 , TYR A:52 , TYR B:68 , ASP B:86BINDING SITE FOR RESIDUE GOL B 148
7AC7SOFTWAREILE B:62 , TRP B:79BINDING SITE FOR RESIDUE PEG B 149

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3D5P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3D5P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:133
 aligned with Q5LEL2_BACFN | Q5LEL2 from UniProtKB/TrEMBL  Length:143

    Alignment length:133
                             1                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129   
         Q5LEL2_BACFN     - -MEVIESKWYKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKLGDNYIYIWAIEDVIAYNHDYGIQKYLQKEYWAFGMDGDIGYILHLSDNSIYRVDLGDLDITSIKYIAPSFDDFLGKAIYLNFNK 132
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.eeeee....hhhhhhhhhhhhh...hhhhhhhhhhh..eeeee..eeeee.hhhhhhhhhhhhhhhhhh...eeeeeee..eeeeee.....eeeee....hhhhheeee.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d5p A   0 GmEVIESKWYKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKLGDNYIYIWAIEDVIAYNHDYGIQKYLQKEYWAFGmDGDIGYILHLSDNSIYRVDLGDLDITSIKYIAPSFDDFLGKAIYLNFNK 132
                             |       9        19        29        39        49        59        69        79   |    89        99       109       119       129   
                             |                                                                                83-MSE                                             
                             1-MSE                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:133
 aligned with Q5LEL2_BACFN | Q5LEL2 from UniProtKB/TrEMBL  Length:143

    Alignment length:133
                             1                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129   
         Q5LEL2_BACFN     - -MEVIESKWYKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKLGDNYIYIWAIEDVIAYNHDYGIQKYLQKEYWAFGMDGDIGYILHLSDNSIYRVDLGDLDITSIKYIAPSFDDFLGKAIYLNFNK 132
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....hhhhhhhhhhhhh...hhhhhhhhhhh..eeeee..eeeee.hhhhhhhhhhhhhhhhhh...eeeeeee..eeeeee.....eeeee....hhhhheeee.hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d5p B   0 GmEVIESKWYKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKLGDNYIYIWAIEDVIAYNHDYGIQKYLQKEYWAFGmDGDIGYILHLSDNSIYRVDLGDLDITSIKYIAPSFDDFLGKAIYLNFNK 132
                             |       9        19        29        39        49        59        69        79   |    89        99       109       119       129   
                             1-MSE                                                                            83-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3D5P)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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