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Title :   CRYSTAL STRUCTURE OF A CONSERVED PROTEIN FROM ENTEROCOCCUS FAECALIS V583

Authors :   K. Tan, H. Li, S. Clancy, A. Joachimiak, Midwest Center For Structur Genomics (Mcsg)

Date :   13 May 08 (Deposition) - 15 Jul 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A

Keywords :   Apc29635, Conserved Protein, Enterococcus Faecalis V583, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, H. Li, S. Clancy, A. Joachimiak
The Crystal Structure Of A Conserved Protein From Enterococcus Faecalis V583.
To Be Published
PubMed: search

Molecule 1 - UNCHARACTERIZED PROTEIN
	Atcc	:	700802
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21
	Expression System Vector Type	:	PLASMID
	Gene	:	EF_3151
	Organism Scientific	:	ENTEROCOCCUS FAECALIS
	Organism Taxid	:	226185
	Strain	:	V583

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 17)

No.	Name	Count	Type	Full Name
1	ACT	4	Ligand/Ion	ACETATE ION
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	9	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:71 , PHE A:72 , SER A:88 , TYR A:299 , HOH A:592	BINDING SITE FOR RESIDUE ACT A 423
2	AC2	SOFTWARE	ALA A:250 , GLN A:251 , SER A:252 , GLY A:320 , HOH A:498 , HOH A:556	BINDING SITE FOR RESIDUE ACT A 424
3	AC3	SOFTWARE	GLN A:57 , SER A:61 , TYR A:299 , TYR A:300 , HOH A:453	BINDING SITE FOR RESIDUE ACT A 425
4	AC4	SOFTWARE	GLN A:156 , SER A:304 , THR A:313 , HOH A:596	BINDING SITE FOR RESIDUE ACT A 426
5	AC5	SOFTWARE	THR A:16 , GLU A:17 , TRP A:368	BINDING SITE FOR RESIDUE EDO A 427
6	AC6	SOFTWARE	HIS A:296 , TYR A:299 , ASP A:319 , HOH A:485	BINDING SITE FOR RESIDUE EDO A 428
7	AC7	SOFTWARE	ALA A:187 , GLN A:190 , ASP A:266 , SER A:267 , HOH A:447 , HOH A:548	BINDING SITE FOR RESIDUE EDO A 429
8	AC8	SOFTWARE	LEU A:193 , ALA A:194 , PHE A:220 , THR A:221 , ARG A:223 , HOH A:510	BINDING SITE FOR RESIDUE EDO A 430

(no "SS Bond" information available for 3D3Y)

(no "Cis Peptide Bond" information available for 3D3Y)

(no "SAP(SNP)/Variant" information available for 3D3Y)

(no "PROSITE Motif" information available for 3D3Y)

(no "Exon" information available for 3D3Y)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:425
 aligned with Q82ZB5_ENTFA | Q82ZB5 from UniProtKB/TrEMBL  Length:422

    Alignment length:425
                               1                                                                                                                                                                                                                                                                                                                                                                                                                                     
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417     
         Q82ZB5_ENTFA     - ---MSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLELQAIFFLEGETEND 422
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3d3yA01 A:-2-232 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                                                                 3d3yA02 A:233-422 Cytochrome Bc1 Complex; Chain A, domain 1                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhh.....hhhhhhhhhhhh...eeeeeeeee..eeeeeeeeeee.hhhh...hhhhhhhhhhhhhhhh..ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhheeeeeeee..hhhhhhhhhhh.......................eeeeeeee...eeeeeeee........hhhhhhhhhhhhh....hhhhhhh........eeeeeee....eeeeeeeehhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhheeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d3y A  -2 SNAmSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLmETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISmNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKmLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFmNVREKEHLAYYASSSIDTFRGFmTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAmLKNQYILALDNAGAWLEKEYLNELmPQTmLTAEEWIARINAVTIPEIQEVAKRLELQAIFFLEGETEND 422
                               |     7        17        27        37        47        57        67        77        87 |      97       107       117       127       137       147       157       167       177       187    |  197       207       217       227       237       247       257       267       277       287 |     297       307    |  317       327       337       347     | 357       367       377|   |  387       397       407       417     
                               |                                            47-MSE                                    89-MSE                                                                                                192-MSE                                                                                          289-MSE                312-MSE                                  353-MSE                  378-MSE                                        
                               1-MSE                                                                                                                                                                                                                                                                                                                                                                                      382-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3D3Y)

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Cytochrome Bc1 Complex; Chain A, domain 1 (45)

Homologous Superfamily: Cytochrome Bc1 Complex; Chain A, domain 1 (45)

Enterococcus faecalis v583. Organism_taxid: 226185. Strain: v583. (1)

1a	3d3yA02	A:233-422
1b	3d3yA01	A:-2-232

(no "Pfam Domain" information available for 3D3Y)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q82ZB5_ENTFA | Q82ZB5)

molecular function
	GO:0003824		catalytic activity		Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3d3y)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 17)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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