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(-) Description

Title :  CRYSTAL STRUCTURE OF 4-HYDROXYBUTYRATE COA-TRANSFERASE (ABFT-2) FROM PORPHYROMONAS GINGIVALIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PGR26
 
Authors :  F. Forouhar, H. Neely, X-Z. Zhang, W. N. Price Ii, M. Hussain, J. Seetha R. Xiao, K. Conover, K. Cunningham, L-C. Ma, C. K. Ho, J. K. Everett, T. B G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomic Consortium (Nesg)
Date :  12 May 08  (Deposition) - 15 Jul 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, H. Neely, X-Z. Zhang, W. N. Price Ii, M. Hussain, J. Seetharaman, R. Xiao, K. Conover, K. Cunningham, L-C. Ma, C. K. Ho, J. K. Everett, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase (Abft-2) From Porphyromonas Gingivalis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 4-HYDROXYBUTYRATE COA-TRANSFERASE
    Atcc: BAA-308
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Vector Type: PLASMID
    Gene: ABFT-2, PG_1956
    Mutation: YES
    Organism Scientific: PORPHYROMONAS GINGIVALIS
    Organism Taxid: 242619
    Strain: W83

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:387
 aligned with Q7MTJ6_PORGI | Q7MTJ6 from UniProtKB/TrEMBL  Length:431

    Alignment length:429
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421         
         Q7MTJ6_PORGI     2 QWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVVAEVNKQMPFIGGENLIHISKLTHIIEVDEPIAEVLPPAISDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRF 430
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------                    -------------------------------------------------------------------------------------3d3u  A02 A:186-290 4-hydroxybutyrate coenzyme  like domains                                             --------------------------------              --------------------------------------      -------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhh....eeee.hhhhhhhhhhhhhhhh......eeee...........hhhhh..eeee.--------------------.hhhhhhhhhh.......eeeeeee......eee......hhhhhhhhh.eeeeeee......ee..eee.hhh.eeeee.........--.hhhhhhhhhhhhh......eeee..hhhhhhhhhh.......eee....hhhhhhhhhh..............eee.....hhhhhhhhh....eee.hhhhhhhhhhhhhh..eeeee....ee.....--------------hhhhhhhhhh.....eeeee...ee....ee.ee....------.......eeee..eeee....hhhhhhhhhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d3u A   2 QWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTL--------------------CHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVVAEVNKQMPFIGGENLIHISKLTHIIEVDEPIAEVLP--GSDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQA--------------GQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILK------TGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRF 430
                                    11        21        31        41        51        61        71        |-         -       101       111       121       131       141       151       161       171       181       | -|      201       211       221       231       241       251       261       271       281       291       301       311       321|        -     | 341       351       361       371  |    381       391       401       411       421         
                                                                                                         80                  101                                                                                     189  |                                                                                                                               322            337                                  374    381                                                 
                                                                                                                                                                                                                        192
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3D3U)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q7MTJ6_PORGI | Q7MTJ6)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006084    acetyl-CoA metabolic process    The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis.

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