3D31 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   MODBC FROM METHANOSARCINA ACETIVORANS

Authors :   S. Gerber, M. Comellas-Bigler, K. P. Locher

Date :   09 May 08 (Deposition) - 10 Jun 08 (Release) - 17 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,C  (1x)
Biol. Unit 3: B,D  (1x)

Keywords :   Atp-Binding, Nucleotide-Binding, Transport, Membrane, Transmembrane, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Gerber, M. Comellas-Bigler, B. A. Goetz, K. P. Locher
Structural Basis Of Trans-Inhibition In A Molybdate/Tungstate Abc Transporter.
Science V. 321 246 2008
PubMed-ID: 18511655 | Reference-DOI: 10.1126/SCIENCE.1156213

Molecule 1 - SULFATE/MOLYBDATE ABC TRANSPORTER, ATP-BINDING PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Organism Scientific	:	METHANOSARCINA ACETIVORANS
	Strain	:	C2A

Molecule 2 - SULFATE/MOLYBDATE ABC TRANSPORTER, PERMEASE PROTEIN
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Organism Scientific	:	METHANOSARCINA ACETIVORANS

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A		C
Biological Unit 3 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	WO4	2	Ligand/Ion	TUNGSTATE(VI)ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	WO4	2	Ligand/Ion	TUNGSTATE(VI)ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	WO4	1	Ligand/Ion	TUNGSTATE(VI)ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	WO4	1	Ligand/Ion	TUNGSTATE(VI)ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:286 , ARG A:288 , LYS A:340 , ALA A:341 , SER A:342 , THR B:320 , SER B:323	BINDING SITE FOR RESIDUE WO4 A 401
2	AC2	SOFTWARE	ILE A:319 , THR A:320 , SER A:323 , SER B:286 , ILE B:287 , ARG B:288 , LYS B:340 , ALA B:341 , SER B:342	BINDING SITE FOR RESIDUE WO4 B 402

(no "SS Bond" information available for 3D31)

(no "Cis Peptide Bond" information available for 3D31)

(no "SAP(SNP)/Variant" information available for 3D31)

(no "PROSITE Motif" information available for 3D31)

(no "Exon" information available for 3D31)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:348
 aligned with Q8TTZ3_METAC | Q8TTZ3 from UniProtKB/TrEMBL  Length:348

    Alignment length:348
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340        
         Q8TTZ3_METAC     1 MIEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFENVLKGRVISAEQGLLRIRVGEVVIDAAGDMEVGDQVYAFLRPENIALSKSSTQSSIRNSLQGRVTEAWVLGALVRVKVDCGVPLNVLITRRSAEEMELSPGVQIYARFKASSVHVLR 348
               SCOP domains d3d31a2 A:1-229 Sulfate/molybdate ABC transporter, ATP-binding protein                                                                                                                                                               d3d31a1 A:230-348 Sulfate/molybdate ABC transporter, ATP-binding protein                                                SCOP domains
               CATH domains 3d31A01 A:1-231 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                   3d31A02 A:232-271,A:343-348             3d31A03 A:272-342  [code=2.40.50.100, no name defined]                 3d31A0 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee....eeeeeeeee....eeeee...hhhhhhhhhhhhh.....eeeeee..ee....hhhhhh.eee..........hhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhh.eeeee....eeeeehhhhhhh....hhhhhhhh..eeeeeeeeeee..eeeeee..eeeeee.......eeeeeehhh.eeee.........eeeeeeeeeeee...eeeeeee...eeeeeee.hhhhhh......eeeeee.hhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3d31 A   1 MIEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFENVLKGRVISAEQGLLRIRVGEVVIDAAGDMEVGDQVYAFLRPENIALSKSSTQSSIRNSLQGRVTEAWVLGALVRVKVDCGVPLNVLITRRSAEEMELSPGVQIYARFKASSVHVLR 348
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340

Chain B from PDB  Type:PROTEIN  Length:348
 aligned with Q8TTZ3_METAC | Q8TTZ3 from UniProtKB/TrEMBL  Length:348

    Alignment length:348
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340        
         Q8TTZ3_METAC     1 MIEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFENVLKGRVISAEQGLLRIRVGEVVIDAAGDMEVGDQVYAFLRPENIALSKSSTQSSIRNSLQGRVTEAWVLGALVRVKVDCGVPLNVLITRRSAEEMELSPGVQIYARFKASSVHVLR 348
               SCOP domains d3d31b2 B:1-229 automated matches                                                                                                                                                                                                    d3d31b1 B:230-348 automated matches                                                                                     SCOP domains
               CATH domains 3d31B01 B:1-231 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                   3d31B02 B:232-271,B:343-348             3d31B03 B:272-342  [code=2.40.50.100, no name defined]                 3d31B0 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee....eeeeeeeee....eeeee...hhhhhhhhhhhhh.....eeeeee..ee....hhhhhh.eee..........hhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhh.eeeee....eeeeehhhhhhh....hhhhhhhh..eeeeeeeeeee..eeeeee..eeeeee.......eeeeeehhh.eeee.........eeeeeeeeeeee...eeeeeee...eeeeeeehhhhhhh......eeeeee.hhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3d31 B   1 MIEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFENVLKGRVISAEQGLLRIRVGEVVIDAAGDMEVGDQVYAFLRPENIALSKSSTQSSIRNSLQGRVTEAWVLGALVRVKVDCGVPLNVLITRRSAEEMELSPGVQIYARFKASSVHVLR 348
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340

Chain C from PDB  Type:PROTEIN  Length:248
 aligned with Q8TTZ4_METAC | Q8TTZ4 from UniProtKB/TrEMBL  Length:272

    Alignment length:248
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252        
         Q8TTZ4_METAC    13 PLTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIFLVIR 260
               SCOP domains d3d31c1 C:13-260 Sulfate/molybdate ABC transporter, permease protein                                                                                                                                                                                     SCOP domains
               CATH domains 3d31C00 C:13-260 MetI-like domain                                                                                                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d31 C  13 PLTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIFLVIR 260
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252

Chain D from PDB  Type:PROTEIN  Length:248
 aligned with Q8TTZ4_METAC | Q8TTZ4 from UniProtKB/TrEMBL  Length:272

    Alignment length:248
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252        
         Q8TTZ4_METAC    13 PLTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIFLVIR 260
               SCOP domains d3d31d1 D:13-260 Sulfate/molybdate ABC transporter, permease protein                                                                                                                                                                                     SCOP domains
               CATH domains 3d31D00 D:13-260 MetI-like domain                                                                                                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d31 D  13 PLTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIFLVIR 260
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 3D31)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q8TTZ3_METAC | Q8TTZ3)


GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016887	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

Chain C,D (Q8TTZ4_METAC | Q8TTZ4)

biological process
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	3d31
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Description

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Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

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