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(-) Description

Title :  CRYSTAL STRUCTURE OF PERIPLASMIC SUGAR-BINDING PROTEIN (YP_001338366.1) FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578 AT 1.30 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  30 Apr 08  (Deposition) - 27 May 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Yp_001338366. 1, Periplasmic Sugar-Binding Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transcription, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Periplasmic Sugar-Binding Protein (Yp_001338366. 1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 1. 30 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE LACI-TYPE TRANSCRIPTIONAL REGULATOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Vector Type: PLASMID
    Gene: YP_001338366.1, KPN78578_46750, KPN_04753
    Organism Scientific: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE
    Organism Taxid: 272620
    Strain: STRAIN ATCC 700721 / MGH 78578

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric/Biological Unit (3, 13)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:35 , PHE A:43 , GLN A:63 , GLY A:65 , HIS A:180BINDING SITE FOR RESIDUE CL A 1
2AC2SOFTWAREARG A:230 , LEU A:255 , HOH A:541BINDING SITE FOR RESIDUE CL A 2
3AC3SOFTWAREARG A:201 , ARG A:230BINDING SITE FOR RESIDUE CL A 3
4AC4SOFTWARELYS A:36 , TRP A:42 , PHE A:43 , GLU A:117 , HIS A:166 , GLU A:195 , PHE A:220 , SER A:222 , HOH A:445BINDING SITE FOR RESIDUE GOL A 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3D02)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3D02)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:300
 aligned with A6THR5_KLEP7 | A6THR5 from UniProtKB/TrEMBL  Length:327

    Alignment length:300
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327
         A6THR5_KLEP7    28 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPSANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMMIPSQAASLIKSGDITEGITYDPATAGYALAAVASTLLNGKTIEPGFELKELGKAEVDSDKHIIRFHKVLLVNKDNIDSLY 327
               SCOP domains d3d02a_ A: automated matches                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhh..eeeee.........eeee..hhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhh......eeee..hhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhh........ee...ee.eee....eee....eee...hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3d02 A  28 EKTVVNISKVDGmPWFNRmGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPSANWDVEIIDNEKFAAEYVEHmAKRmGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDmHEVTRRmPVAESVDDSRRTTLDLmKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGmmIPSQAASLIKSGDITEGITYDPATAGYALAAVASTLLNGKTIEPGFELKELGKAEVDSDKHIIRFHKVLLVNKDNIDSLY 327
                                    37  |     47        57        67        77        87        97       107       117       127       137      |147|      157       167       177      |187   |   197       207|      217       227       237       247       257       267       277       287       297       307       317       327
                                       40-MSE |                                                                                               144-MSE                                 184-MSE  |              208-MSE                               246-MSE                                                                             
                                             46-MSE                                                                                               148-MSE                                    191-MSE                                                 247-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3D02)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3D02)

(-) Gene Ontology  (0, 0)

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