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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE TRANSGLYCOSYLASE FROM CAULOBACTER CRESCENTUS
 
Authors :  U. A. Ramagopal, K. Chattopadhyay, R. Toro, S. Wasserman, J. Freeman, C K. Bain, T. Gheyi, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Center For Structural Genomics (Nysgxrc)
Date :  28 Apr 08  (Deposition) - 10 Jun 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A (1x),B (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, K. Chattopadhyay, R. Toro, S. Wasserman, J. Freeman, C. Logan, K. Bain, T. Gheyi, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Putative Transglycosylase From Caulobacter Crescentus.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE TRANSGLYCOSYLASE
    Atcc: 19089
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX4(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 56-395
    Gene: CC_3740
    Organism Scientific: CAULOBACTER CRESCENTUS
    Organism Taxid: 190650
    Strain: CB15

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A (1x)B (1x)
Biological Unit 2 (1x): A 
Biological Unit 3 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 3 (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:202 , ASP A:203 , LYS A:204BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWAREARG B:156 , SER B:202 , ASP B:203 , LYS B:204BINDING SITE FOR RESIDUE SO4 B 2
3AC3SOFTWAREARG B:234 , ARG B:294BINDING SITE FOR RESIDUE SO4 B 3
4AC4SOFTWAREARG B:144 , SER B:146BINDING SITE FOR RESIDUE SO4 B 4
5AC5SOFTWARETHR B:240 , ARG B:289BINDING SITE FOR RESIDUE SO4 B 5
6AC6SOFTWAREGLY B:185 , SER B:186BINDING SITE FOR RESIDUE SO4 B 6
7AC7SOFTWAREARG A:294BINDING SITE FOR RESIDUE SO4 A 7

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:86 -A:98
2B:86 -B:98

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:276 -Gly A:277
2Ala B:84 -Gly B:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CZB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CZB)

(-) Exons   (0, 0)

(no "Exon" information available for 3CZB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:325
 aligned with Q9A226_CAUCR | Q9A226 from UniProtKB/TrEMBL  Length:395

    Alignment length:338
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387        
         Q9A226_CAUCR    58 MPAALSFAGLAGWAEEDHLAALNAFRAGCGVSKDPAAARVCGLAKATKDLDVSGAKAFIEANFRVEAVDGGGDGLLTAYFAPQYEARMSRNAEFSAPLRGLPADLVVLDLGPFEPALVGKKITGHVEGSTFVPYPDRAEIEATPSDKPLAWMRPEELFFLQIQGSGVLVLPDGRRVRAVFAGTNGKPFVGIAIAMRDKGLLPDNNTSADAIRTWLAEHRGPEADAIMRLNPRYVFFRTVPDDGKEPAGAAGVALPPGRAIAVDPGYHAYGGFYWLDAAAPKLVGAFPVYRRAVTALDTGGAIKGEVRADLYMGSGAVAGVEAGRVRHTLRLYRLTPNP 395
               SCOP domains d3czba_ A: automated matches                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhheeeee.hhhh.eeeeee...eee..........eee.......eeee....hhhhh..eeeeeee..eeee..hhhhhh........eeehhhhhhhhhhhheeeee.....eeeeeeeee.......hhhhhhh....------hhhhhhhhhhh.hhhhhhhhh.....eeeeeee..................eee..........eeeeeee-------...eeeeeeeee.........eeeee...hhhhhhhhh..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3czb A  58 MPAALSFAGLAGWAEEDHLAALNAFRAGCGVSKDPAAARVCGLAKATKDLDVSGAKAFIEANFRVEAVDGGGDGLLTAYFAPQYEARMSRNAEFSAPLRGLPADLVVLDLGPFEPALVGKKITGHVEGSTFVPYPDRAEIEATPSDKPLAWMRPEELFFLQIQGSGVLVLPDGRRVRAVFAGTNGKPFVGIAIAMRDKGLL------ADAIRTWLAEHRGPEADAIMRLNPRYVFFRTVPDDGKEPAGAAGVALPPGRAIAVDPGYHAYGGFYWLDAA-------FPVYRRAVTALDTGGAIKGEVRADLYMGSGAVAGVEAGRVRHTLRLYRLTPNP 395
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257|      267       277       287       297       307       317       327       | -     | 347       357       367       377       387        
                                                                                                                                                                                                                                  258    265                                                                   335     343                                                    


Chain B from PDB  Type:PROTEIN  Length:326
 aligned with Q9A226_CAUCR | Q9A226 from UniProtKB/TrEMBL  Length:395

    Alignment length:333
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391   
         Q9A226_CAUCR    62 LSFAGLAGWAEEDHLAALNAFRAGCGVSKDPAAARVCGLAKATKDLDVSGAKAFIEANFRVEAVDGGGDGLLTAYFAPQYEARMSRNAEFSAPLRGLPADLVVLDLGPFEPALVGKKITGHVEGSTFVPYPDRAEIEATPSDKPLAWMRPEELFFLQIQGSGVLVLPDGRRVRAVFAGTNGKPFVGIAIAMRDKGLLPDNNTSADAIRTWLAEHRGPEADAIMRLNPRYVFFRTVPDDGKEPAGAAGVALPPGRAIAVDPGYHAYGGFYWLDAAAPKLVGAFPVYRRAVTALDTGGAIKGEVRADLYMGSGAVAGVEAGRVRHTLRLYRLTPN 394
               SCOP domains d3czbb_ B: automated matches                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh--.hhhhhhhhhhh.eeeee.hhhh.eeeeeeee.eee..........ee........eeee....hhhhh..eeeeeee..eeee..hhhhhhh........eehhhhhhhhhhhheeeee.....eeeeeeeee.......hhhhhhh...-----.hhhhhhhhhhhh.hhhhhhhhh.....eeeeeee..................eee..........eeeeeee..........eeeeeeeee.........eeeeeeeehhhhhhhhhh.eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3czb B  62 LSFAGLAGWAEEDHLAALNAFRAGCGVSKDPAAARVCGLAKAT--LDVSGAKAFIEANFRVEAVDGGGDGLLTAYFAPQYEARMSRNAEFSAPLRGLPADLVVLDLGPFEPALVGKKITGHVEGSTFVPYPDRAEIEATPSDKPLAWMRPEELFFLQIQGSGVLVLPDGRRVRAVFAGTNGKPFVGIAIAMRDKGL-----TSADAIRTWLAEHRGPEADAIMRLNPRYVFFRTVPDDGKEPAGAAGVALPPGRAIAVDPGYHAYGGFYWLDAAAPKLVGAFPVYRRAVTALDTGGAIKGEVRADLYMGSGAVAGVEAGRVRHTLRLYRLTPN 394
                                    71        81        91       101  |  | 111       121       131       141       151       161       171       181       191       201       211       221       231       241       251     |   - |     271       281       291       301       311       321       331       341       351       361       371       381       391   
                                                                    104  |                                                                                                                                                   257   263                                                                                                                                   
                                                                       107
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CZB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CZB)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9A226_CAUCR | Q9A226)
molecular function
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0009254    peptidoglycan turnover    The continual breakdown and regeneration of peptidoglycan required to maintain the cell wall.
cellular component
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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