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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM METHANOTHERMOBACTER THERMAUTOTROPHICUS
 
Authors :  R. Sugadev, S. K. Burley, S. Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date :  24 Apr 08  (Deposition) - 13 May 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Biol. Unit 4:  C  (1x)
Biol. Unit 5:  D  (1x)
Keywords :  10518A, Psi-Ii, Uncharacterized Protein, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Sugadev, S. K. Burley, S. Swaminathan
Crystal Structure Of An Uncharacterized Protein From Methanothermobacter Thermautotrophicus.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MTH1410
    Organism Scientific: METHANOTHERMOBACTER THERMAUTOTROPHICUS
    Organism Taxid: 187420
    Strain: DELTA H

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x): A   
Biological Unit 3 (1x):  B  
Biological Unit 4 (1x):   C 
Biological Unit 5 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3CXJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CXJ)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr A:35 -Pro A:36
2Tyr B:35 -Pro B:36
3Tyr C:35 -Pro C:36
4Tyr D:35 -Pro D:36

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CXJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CXJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3CXJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
 aligned with O27461_METTH | O27461 from UniProtKB/TrEMBL  Length:155

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
         O27461_METTH     1 MSQEMIKKWLDEEGFLRMEVPDENARFHYVVNYPEDHVIDIIQPAGKDDMILIACATSVSPEHQAGIRALSMEKRTEFIWKVRFTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVMWMIQERFG 144
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3cxjA00 A:3-146  [code=3.30.1460.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..eeee.....eeeeeeee.....eeeeeee.....eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cxj A   3 LSQEmIKKWLDEEGFLRmEVPDENARFHYVVNYPEDHVIDIIQPAGKDDmILIACATSVSPEHQAGIRALSmEKRTEFIWKVRFTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVmWmIQERFG 146
                                |   12       |22        32        42        52        62        72 |      82        92       102       112       122       132     | 142    
                                |           20-MSE                          52-MSE                74-MSE                                                         138-MSE    
                                7-MSE                                                                                                                              140-MSE  


Chain B from PDB  Type:PROTEIN  Length:144
 aligned with O27461_METTH | O27461 from UniProtKB/TrEMBL  Length:155

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
         O27461_METTH     1 MSQEMIKKWLDEEGFLRMEVPDENARFHYVVNYPEDHVIDIIQPAGKDDMILIACATSVSPEHQAGIRALSMEKRTEFIWKVRFTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVMWMIQERFG 144
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3cxjB00 B:3-146  [code=3.30.1460.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..eee......eeeeeeee.....eeeeeee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cxj B   3 LSQEmIKKWLDEEGFLRmEVPDENARFHYVVNYPEDHVIDIIQPAGKDDmILIACATSVSPEHQAGIRALSmEKRTEFIWKVRFTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVmWmIQERFG 146
                                |   12       |22        32        42        52        62        72 |      82        92       102       112       122       132     | 142    
                                7-MSE       20-MSE                          52-MSE                74-MSE                                                         138-MSE    
                                                                                                                                                                   140-MSE  


Chain C from PDB  Type:PROTEIN  Length:144
 aligned with O27461_METTH | O27461 from UniProtKB/TrEMBL  Length:155

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
         O27461_METTH     1 MSQEMIKKWLDEEGFLRMEVPDENARFHYVVNYPEDHVIDIIQPAGKDDMILIACATSVSPEHQAGIRALSMEKRTEFIWKVRFTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVMWMIQERFG 144
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3cxjC00 C:3-146  [code=3.30.1460.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..eeee.....eeeeeeee.....eeeeeee.....eeeeeeeee.hhhhhhhh...hhhhhhhhhhhhhhhhh....eeeee.......eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cxj C   3 LSQEmIKKWLDEEGFLRmEVPDENARFHYVVNYPEDHVIDIIQPAGKDDmILIACATSVSPEHQAGIRALSmEKRTEFIWKVRFTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVmWmIQERFG 146
                                |   12       |22        32        42        52        62        72 |      82        92       102       112       122       132     | 142    
                                7-MSE       20-MSE                          52-MSE                74-MSE                                                         138-MSE    
                                                                                                                                                                   140-MSE  


Chain D from PDB  Type:PROTEIN  Length:144
 aligned with O27461_METTH | O27461 from UniProtKB/TrEMBL  Length:155

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
         O27461_METTH     1 MSQEMIKKWLDEEGFLRMEVPDENARFHYVVNYPEDHVIDIIQPAGKDDMILIACATSVSPEHQAGIRALSMEKRTEFIWKVRFTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVMWMIQERFG 144
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3cxjD00 D:3-146  [code=3.30.1460.10, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.eeee.....eeeeeeee.....eeeeeee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.......eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cxj D   3 LSQEmIKKWLDEEGFLRmEVPDENARFHYVVNYPEDHVIDIIQPAGKDDmILIACATSVSPEHQAGIRALSmEKRTEFIWKVRFTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVmWmIQERFG 146
                                |   12       |22        32        42        52        62        72 |      82        92       102       112       122       132     | 142    
                                7-MSE       20-MSE                          52-MSE                74-MSE                                                         138-MSE    
                                                                                                                                                                   140-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CXJ)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CXJ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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