3CV2 - JenaLib

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Title :   ATOMIC RESOLUTION STRUCTURES OF ESCHERICHIA COLI AND BACILLIS ANTHRACIS MALATE SYNTHASE A: COMPARISON WITH ISOFORM G AND IMPLICATIONS FOR STRUCTURE BASED DRUG DESIGN

Authors :   J. R. Lohman, S. J. Remington

Date :   17 Apr 08 (Deposition) - 11 Nov 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Malate Synthase, Tim Barrel, Cytoplasm, Glyoxylate Bypass, Transferase, Tricarboxylic Acid Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Lohman, A. C. Olson, S. J. Remington
Atomic Resolution Structures Of Escherichia Coli And Bacillus Anthracis Malate Synthase A: Comparison With Isoform G And Implications For Structure-Based Drug Discovery
Protein Sci. V. 17 1935 2008
PubMed-ID: 18714089 | Reference-DOI: 10.1110/PS.036269.108
(for further references see the PDB file header)

Molecule 1 - MALATE SYNTHASE A
	Chains	:	A, B
	EC Number	:	2.3.3.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PBAD
	Expression System Strain	:	TOP10
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ACEB, MAS
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	MSA

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 9)

No.	Name	Count	Type	Full Name
1	COA	2	Ligand/Ion	COENZYME A
2	CSO	2	Mod. Amino Acid	S-HYDROXYCYSTEINE
3	MG	3	Ligand/Ion	MAGNESIUM ION
4	OXL	2	Ligand/Ion	OXALATE ION

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	COA	1	Ligand/Ion	COENZYME A
2	CSO	1	Mod. Amino Acid	S-HYDROXYCYSTEINE
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	OXL	1	Ligand/Ion	OXALATE ION

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	COA	1	Ligand/Ion	COENZYME A
2	CSO	1	Mod. Amino Acid	S-HYDROXYCYSTEINE
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	OXL	1	Ligand/Ion	OXALATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:166 , GLU A:250 , GLY A:275 , ARG A:276 , TRP A:277 , ASP A:278 , TRP A:365	BINDING SITE FOR RESIDUE OXL A 1000
2	AC2	SOFTWARE	ARG B:166 , GLU B:250 , GLY B:275 , ARG B:276 , TRP B:277 , ASP B:278 , TRP B:365	BINDING SITE FOR RESIDUE OXL B 1000
3	AC3	SOFTWARE	GLU B:250 , ASP B:278	BINDING SITE FOR RESIDUE MG B 1
4	AC4	SOFTWARE	GLU A:250 , ASP A:278	BINDING SITE FOR RESIDUE MG A 1
5	AC5	SOFTWARE	PRO A:158 , ASN A:159	BINDING SITE FOR RESIDUE MG A 1001
6	AC6	SOFTWARE	THR A:95 , LYS A:101 , MET A:102 , ASN A:105 , ALA A:106 , TYR A:154 , ALA A:367 , HIS A:368 , PRO A:369	BINDING SITE FOR RESIDUE COA A 1002
7	AC7	SOFTWARE	THR B:95 , LYS B:101 , MET B:102 , ASN B:105 , ALA B:106 , TYR B:154 , ALA B:367 , HIS B:368 , PRO B:369	BINDING SITE FOR RESIDUE COA B 1001

(no "SS Bond" information available for 3CV2)

(no "Cis Peptide Bond" information available for 3CV2)

(no "SAP(SNP)/Variant" information available for 3CV2)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MALATE_SYNTHASE	PS00510	Malate synthase signature.	MASY_ECOLI	266-281	2	A:266-281 B:266-281

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MALATE_SYNTHASE	PS00510	Malate synthase signature.	MASY_ECOLI	266-281	1	A:266-281 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MALATE_SYNTHASE	PS00510	Malate synthase signature.	MASY_ECOLI	266-281	1	- B:266-281

(no "Exon" information available for 3CV2)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:524
 aligned with MASY_ECOLI | P08997 from UniProtKB/Swiss-Prot  Length:533

    Alignment length:524
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
           MASY_ECOLI    10 ELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDNGTLPDFISETASIRDADWKIRGIPADLEDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPAVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFIPSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHPGLADTAMAVFNDILGSRKNQLEVMREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFDDAARLMEQITTSDELIDFLTLPGYRLLA 533
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh........hhhhh...eeeeee.hhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhh...eee.....eee......eeeee......eeeeeee..eeeehhhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhh..hhhhh..hhhhh...hhhhhhhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhh................hhhhhhh......hhhhhhhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MALATE_SYNTHASE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cv2 A  10 ELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDNGTLPDFISETASIRDADWKIRGIPADLEDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPAVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFIPSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHPGLADTAMAVFNDILGSRKNQLEVMREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGcVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFDDAARLMEQITTSDELIDFLTLPGYRLLA 533
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      438-CSO

Chain B from PDB  Type:PROTEIN  Length:525
 aligned with MASY_ECOLI | P08997 from UniProtKB/Swiss-Prot  Length:533

    Alignment length:525
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528     
           MASY_ECOLI     9 DELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDNGTLPDFISETASIRDADWKIRGIPADLEDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPAVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFIPSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHPGLADTAMAVFNDILGSRKNQLEVMREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFDDAARLMEQITTSDELIDFLTLPGYRLLA 533
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhh.......hhhhh...eeeeee.hhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhh...eee.....eee......eeeee......eeeeeee..eeeehhhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhh..hhhhh..hhhhh...hhhhhhhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhh................hhhhhhh......hhhhhhhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MALATE_SYNTHASE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cv2 B   9 DELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDNGTLPDFISETASIRDADWKIRGIPADLEDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPAVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFIPSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHPGLADTAMAVFNDILGSRKNQLEVMREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGcVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFDDAARLMEQITTSDELIDFLTLPGYRLLA 533
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                       438-CSO

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3CV2)

(no "CATH Domain" information available for 3CV2)

(no "Pfam Domain" information available for 3CV2)

Asymmetric Unit(hide GO term definitions)

Chain A,B (MASY_ECOLI | P08997)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004474	malate synthase activity	Catalysis of the reaction: acetyl-CoA + glyoxylate + H(2)O = (S)-malate + CoA + H(+).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006097	glyoxylate cycle	A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate.
	GO:0006099	tricarboxylic acid cycle	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3cv2)

Biological Units
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	3cv2
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	MASY_ECOLI \| P08997	:	3cuz 3cv1

1d8c	ISOFORM
3cux
3cuz
3cv1

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 9)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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