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(-) Description

Title :  CRYSTAL STRUCTURE OF A FIC DOMAIN CONTAINING SIGNALING PROTEIN (BT_2513) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.71 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 Apr 08  (Deposition) - 29 Apr 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.71
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Fic Protein Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Protein Of Unknown Function With A Fic Domain (Np_811426. 1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2. 71 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN OF UNKNOWN FUNCTION WITH A FIC DOMAIN
    Atcc: 29148
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-290
    Gene: NP_811426.1, BT_2513
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON VPI-5482
    Organism Taxid: 226186
    Strain: VPI-5482 / DSM 2079 / NCTC 10582 / E50

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3CUC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CUC)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gln A:17 -Pro A:18
2Gln B:17 -Pro B:18

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CUC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CUC)

(-) Exons   (0, 0)

(no "Exon" information available for 3CUC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
 aligned with Q8A4T4_BACTN | Q8A4T4 from UniProtKB/TrEMBL  Length:479

    Alignment length:279
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273         
         Q8A4T4_BACTN     4 SNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETSGNASLKDYEEMKAHNVGLEMIKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPDGQDIRMQIKVGEYKSRPNSVLTATGEVFSYASPEETPAFMTSLVDWYNLEADKGILTPVELAALLHYRYIRIHPFEDGNGRIARLLVNFVLHRYGYPMIVIHSEDKSNYLNILHQCDVEAGLTPSDGANATLNDILPFVNYLSSCLIRSLTLAIKAAKGESIE 282
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3cucA00 A:4-282 Fic-like domain                                                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh......---------------..........ee.--..ee......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cuc A   4 SNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLmFGETSGNASLKDYEEmKAHNVGLEmIKQEAQDKERPLTESFIRELNRTILVQDYWK---------------VGEYKSRPNSVLT--GEVFSYASPEETPAFmTSLVDWYNLEADKGILTPVELAALLHYRYIRIHPFEDGNGRIARLLVNFVLHRYGYPmIVIHSEDKSNYLNILHQCDVEAGLTPSDGANATLNDILPFVNYLSSCLIRSLTLAIKAAKGESIE 282
                                    13        23        33        43        53   |    63        73        83        93       103       113         -     | 133       | -|      153     | 163       173       183       193       203       213   |   223       233       243       253       263       273         
                                                                                57-MSE          73-MSE   82-MSE                        113             129         141  |            159-MSE                                                   217-MSE                                                             
                                                                                                                                                                      144                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:268
 aligned with Q8A4T4_BACTN | Q8A4T4 from UniProtKB/TrEMBL  Length:479

    Alignment length:282
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283  
         Q8A4T4_BACTN     4 SNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETSGNASLKDYEEMKAHNVGLEMIKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPDGQDIRMQIKVGEYKSRPNSVLTATGEVFSYASPEETPAFMTSLVDWYNLEADKGILTPVELAALLHYRYIRIHPFEDGNGRIARLLVNFVLHRYGYPMIVIHSEDKSNYLNILHQCDVEAGLTPSDGANATLNDILPFVNYLSSCLIRSLTLAIKAAKGESIEEEG 285
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3cucB00 B:4-285 Fic-like domain                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.....--------------............ee.....ee......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cuc B   4 SNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLmFGETSGNASLKDYEEmKAHNVGLEmIKQEAQDKERPLTESFIRELNRTILVQDYW--------------IKVGEYKSRPNSVLTATGEVFSYASPEETPAFmTSLVDWYNLEADKGILTPVELAALLHYRYIRIHPFEDGNGRIARLLVNFVLHRYGYPmIVIHSEDKSNYLNILHQCDVEAGLTPSDGANATLNDILPFVNYLSSCLIRSLTLAIKAAKGESIEEEG 285
                                    13        23        33        43        53   |    63        73        83        93       103        |-         -   |   133       143       153     | 163       173       183       193       203       213   |   223       233       243       253       263       273       283  
                                                                                57-MSE          73-MSE   82-MSE                       112            127                             159-MSE                                                   217-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CUC)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CUC)

(-) Gene Ontology  (0, 0)

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