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(-) Description

Title :  CRYSTAL STRUCTURE OF RESPONSE REGULATOR RECEIVER DOMAIN PROTEIN (CHEY-LIKE) FROM METHANOSPIRILLUM HUNGATEI JF-1
 
Authors :  R. L. Hiner, R. Toro, Y. Patskovsky, J. Freeman, S. Chang, D. Smith, C. Gr S. R. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx R Center For Structural Genomics (Nysgxrc)
Date :  07 Apr 08  (Deposition) - 22 Apr 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.58
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Signal Regulator Receiver Domain, Protein Structure Initiative, Psi-2, New York Sgx Research Center For Structural Genomics, Nysgxrc, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. L. Hiner, R. Toro, Y. Patskovsky, J. Freeman, S. Chang, D. Smith, C. Groshong, S. R. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Response Regulator Receiver Domain Protein (Chey-Like) From Methanospirillum Hungatei Jf-1.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RESPONSE REGULATOR RECEIVER DOMAIN PROTEIN, CHEY-LIKE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Taxid: 562
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 2-122
    Gene: REC, MHUN_3201
    Organism Scientific: METHANOSPIRILLUM HUNGATEI JF-1
    Organism Taxid: 323259
    Strain: JF-1 / DSM 864

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric/Biological Unit (4, 18)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE8Mod. Amino AcidSELENOMETHIONINE
3NA4Ligand/IonSODIUM ION
4PHD2Mod. Amino AcidASPARTYL PHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:9 , PHD A:52 , LYS A:54 , HOH A:206 , HOH A:215BINDING SITE FOR RESIDUE NA A 131
2AC2SOFTWAREASP B:9 , PHD B:52 , LYS B:54 , HOH B:161 , HOH B:170BINDING SITE FOR RESIDUE NA B 131
3AC3SOFTWAREHOH A:202 , HOH A:222 , ALA B:96 , HOH B:165 , HOH B:169 , HOH B:198 , HOH B:212BINDING SITE FOR RESIDUE NA B 132
4AC4SOFTWAREPRO B:72 , MSE B:74 , HOH B:178 , HOH B:180 , HOH B:186 , HOH B:192 , HOH B:201BINDING SITE FOR RESIDUE NA B 133
5AC5SOFTWARELEU A:1 , LYS A:2 , GLU A:24 , GLY A:25 , TYR A:26 , HOH A:209 , ASN B:105BINDING SITE FOR RESIDUE GOL A 132
6AC6SOFTWARETYR A:99 , ILE A:100 , MSE A:101 , ASP A:108 , LYS A:112 , HOH A:162 , ASN B:93BINDING SITE FOR RESIDUE GOL A 133
7AC7SOFTWARELEU B:1 , LYS B:2 , GLU B:24 , GLY B:25BINDING SITE FOR RESIDUE GOL B 134
8AC8SOFTWAREASN A:93 , GLY A:95 , GLU B:115 , LYS B:116 , GLU B:119 , HOH B:155BINDING SITE FOR RESIDUE GOL B 135

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CRN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:102 -Pro A:103
2Lys B:102 -Pro B:103

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CRN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CRN)

(-) Exons   (0, 0)

(no "Exon" information available for 3CRN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with Q2FNF5_METHJ | Q2FNF5 from UniProtKB/TrEMBL  Length:143

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
         Q2FNF5_METHJ     1 MKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFDIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEKDQIVDGDKVAE 133
               SCOP domains d3crna_ A: automated matches                                                                                                          SCOP domains
               CATH domains 3crnA00 A:1-129  [code=3.40.50.2300, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhh...eeee.......hhhhhhhhhhhhh...eeeeee...hhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhhhh----hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3crn A   1 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFdIKLPDmEGTELLEKAHKLRPGmKKImVTGYASLENSVFSLNAGADAYImKPVNPRDLLEKIKEKLDEQEKE----GHHHHH 129
                                    10        20        30        40        50 |     |60        70   |   |80        90       100|      110       120  |    126   
                                                                              52-PHD |              74-MSE                    101-MSE               123  124     
                                                                                    58-MSE              78-MSE                                                   


Chain B from PDB  Type:PROTEIN  Length:125
 aligned with Q2FNF5_METHJ | Q2FNF5 from UniProtKB/TrEMBL  Length:143

    Alignment length:129
                             1                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119         
         Q2FNF5_METHJ     - -MKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFDIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEKDQIVDG 128
               SCOP domains d3crnb_ B: automated matches                                                                                                      SCOP domains
               CATH domains 3crnB00 B:0-124  [code=3.40.50.2300, no name defined]                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhh...eeee.......hhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhh----h Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3crn B   0 SLKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFdIKLPDmEGTELLEKAHKLRPGmKKImVTGYASLENSVFSLNAGADAYImKPVNPRDLLEKIKEKLDEQEKE----G 124
                                     9        19        29        39        49  |     59        69    |   79        89        99 |     109       119   |    |
                                                                               52-PHD |              74-MSE                    101-MSE               123  124
                                                                                     58-MSE              78-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CRN)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q2FNF5_METHJ | Q2FNF5)
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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