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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNKNOWN PROTEIN FROM BIFIDOBACTERIUM ADOLESCENTIS
 
Authors :  R. Sugadev, S. K. Burley, S. Swaminathan, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  31 Mar 08  (Deposition) - 13 May 08  (Release) - 09 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym./Biol. Unit :  A
Keywords :  Unknown Protein, Tim Barrel, 11083B, Monomer, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Sugadev, S. K. Burley, S. Swaminathan
Crystal Structure Of An Unknown Protein From Bifidobacterium Adolescentis.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BAD_1471
    Organism Scientific: BIFIDOBACTERIUM ADOLESCENTIS ATCC 15703
    Organism Taxid: 367928
    Strain: DSM 20083

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:247 , GLY A:264 , THR A:265BINDING SITE FOR RESIDUE ACT A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CPG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3CPG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CPG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CPG)

(-) Exons   (0, 0)

(no "Exon" information available for 3CPG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
 aligned with A1A3G9_BIFAA | A1A3G9 from UniProtKB/TrEMBL  Length:272

    Alignment length:259
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257         
         A1A3G9_BIFAA     8 KNLANEVIDDARAREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTIGAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAEGSTIVRVGTAIF 266
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3cpgA00 A:10-268 Alanine racemase                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhh.eee..------...eee.eee....hhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh..eeeeee............hhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhh........eee.....hhhhhhhh...eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cpg A  10 KNLANEVIDDARAREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEImAAIDAGVRmIGENRPQEVTAKAEGLARRCAERGFSLGV------AAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLmTIGAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSmGmTGDmELAIAEGSTIVRVGTAIF 268
                                    19        29        39        49        59     |  69    |   79        89        99   |     -|      119       129       139       149       159       169       179       189       199  |    209       219       229       239    | |249|      259         
                                                                                  65-MSE   74-MSE                      103    110                                                                                         202-MSE                                   244-MSE |                  
                                                                                                                                                                                                                                                                      246-MSE                  
                                                                                                                                                                                                                                                                          250-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CPG)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CPG)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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