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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN CLASS II ALCOHOL DEHYDROGENASE (ADH4) IN COMPLEX WITH NAD AND ZN

Authors :   K. L. Kavanagh, N. Shafqat, W. Yue, F. Von Delft, S. Bishop, A. Roos, J. M A. M. Edwards, C. H. Arrowsmith, C. Bountra, U. Oppermann, Structural Consortium (Sgc)

Date :   29 Mar 08 (Deposition) - 15 Apr 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Medium Chain Dehydrogenase, Alcohol Dehydrogenase, Zinc-Dependent, Metal-Binding, Nad, Oxidoreductase, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. L. Kavanagh, N. Shafqat, W. Yue, F. Von Delft, S. Bishop, A. Roos, J. Murray, A. M. Edwards, C. H. Arrowsmith, C. Bountra, U. Oppermann
Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn.
To Be Published
PubMed: search

Molecule 1 - ALCOHOL DEHYDROGENASE 4
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PNIC28-BSA4 (PET DERIVATIVE)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ADH4
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ALCOHOL DEHYDROGENASE CLASS II PI CHAIN

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 24)

No.	Name	Count	Type	Full Name
1	ACY	5	Ligand/Ion	ACETIC ACID
2	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
3	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 9)

No.	Name	Count	Type	Full Name
1	ACY	3	Ligand/Ion	ACETIC ACID
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
3	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 7)

No.	Name	Count	Type	Full Name
1	ACY	2	Ligand/Ion	ACETIC ACID
2	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
3	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:47 , HIS A:69 , CYS A:180	BINDING SITE FOR RESIDUE ZN A 501
02	AC2	SOFTWARE	CYS A:99 , CYS A:102 , CYS A:105 , CYS A:113	BINDING SITE FOR RESIDUE ZN A 502
03	AC3	SOFTWARE	CYS B:47 , HIS B:69 , CYS B:180	BINDING SITE FOR RESIDUE ZN B 501
04	AC4	SOFTWARE	CYS B:99 , CYS B:102 , CYS B:105 , CYS B:113	BINDING SITE FOR RESIDUE ZN B 502
05	AC5	SOFTWARE	CYS C:47 , HIS C:69 , CYS C:180	BINDING SITE FOR RESIDUE ZN C 501
06	AC6	SOFTWARE	CYS C:99 , CYS C:102 , CYS C:105 , CYS C:113	BINDING SITE FOR RESIDUE ZN C 502
07	AC7	SOFTWARE	CYS D:47 , HIS D:69 , CYS D:180	BINDING SITE FOR RESIDUE ZN D 501
08	AC8	SOFTWARE	CYS D:99 , CYS D:102 , CYS D:105 , CYS D:113	BINDING SITE FOR RESIDUE ZN D 502
09	AC9	SOFTWARE	HIS A:48 , THR A:49 , CYS A:180 , THR A:184 , GLY A:205 , GLY A:207 , GLY A:208 , ASP A:229 , LYS A:234 , CYS A:274 , ALA A:275 , THR A:280 , ILE A:298 , GLY A:299 , THR A:323 , PHE A:324 , PHE A:325 , ARG A:375	BINDING SITE FOR RESIDUE NAD A 400
10	BC1	SOFTWARE	HIS B:48 , THR B:49 , CYS B:180 , THR B:184 , GLY B:205 , GLY B:207 , GLY B:208 , ASP B:229 , LYS B:234 , CYS B:274 , ALA B:275 , THR B:280 , ILE B:298 , GLY B:299 , THR B:323 , PHE B:324 , PHE B:325 , ARG B:375	BINDING SITE FOR RESIDUE NAD B 400
11	BC2	SOFTWARE	HIS C:48 , THR C:49 , CYS C:180 , THR C:184 , GLY C:205 , GLY C:207 , GLY C:208 , ASP C:229 , ILE C:230 , LYS C:234 , CYS C:274 , ALA C:275 , THR C:280 , ILE C:298 , GLY C:299 , THR C:323 , PHE C:324 , PHE C:325 , ARG C:375	BINDING SITE FOR RESIDUE NAD C 400
12	BC3	SOFTWARE	HIS D:48 , THR D:49 , CYS D:180 , THR D:184 , GLY D:205 , GLY D:207 , GLY D:208 , ILE D:228 , ASP D:229 , ILE D:230 , LYS D:234 , CYS D:274 , ALA D:275 , THR D:280 , ILE D:298 , GLY D:299 , THR D:323 , PHE D:324 , PHE D:325 , ARG D:375	BINDING SITE FOR RESIDUE NAD D 400
13	BC4	SOFTWARE	SER A:124 , ASP A:125 , GLN A:126 , GLN A:127 , LEU A:128	BINDING SITE FOR RESIDUE EDO A 503
14	BC5	SOFTWARE	PHE B:204 , ILE B:228 , PRO B:249	BINDING SITE FOR RESIDUE EDO B 503
15	BC6	SOFTWARE	SER B:124 , ASP B:125 , GLN B:126 , GLN B:127 , LEU B:128	BINDING SITE FOR RESIDUE EDO B 504
16	BC7	SOFTWARE	SER D:124 , ASP D:125 , GLN D:126 , GLN D:127 , LEU D:128	BINDING SITE FOR RESIDUE EDO D 503
17	BC8	SOFTWARE	PHE A:204 , PRO A:249 , ILE A:256 , ALA A:283	BINDING SITE FOR RESIDUE EDO A 504
18	BC9	SOFTWARE	PHE C:204 , PRO C:249	BINDING SITE FOR RESIDUE EDO C 503
19	CC1	SOFTWARE	PHE D:204 , ILE D:228 , PRO D:249	BINDING SITE FOR RESIDUE EDO D 504
20	CC2	SOFTWARE	CYS A:47 , THR A:49 , HIS A:69 , TYR A:95 , PHE A:147 , CYS A:180	BINDING SITE FOR RESIDUE ACY A 401
21	CC3	SOFTWARE	THR B:49 , HIS B:69 , TYR B:95 , PHE B:147 , CYS B:180	BINDING SITE FOR RESIDUE ACY B 401
22	CC4	SOFTWARE	THR C:49 , HIS C:69 , TYR C:95 , PHE C:147 , CYS C:180	BINDING SITE FOR RESIDUE ACY C 401
23	CC5	SOFTWARE	CYS D:47 , THR D:49 , HIS D:69 , TYR D:95 , PHE D:147 , CYS D:180	BINDING SITE FOR RESIDUE ACY D 401
24	CC6	SOFTWARE	SER A:304 , GLU B:312	BINDING SITE FOR RESIDUE ACY B 505

(no "SS Bond" information available for 3COS)

Asymmetric Unit

No.	Residues
1	Phe A:63	-	Pro A:64
2	Phe B:63	-	Pro B:64
3	Phe C:63	-	Pro C:64
4	Phe D:63	-	Pro D:64

Asymmetric Unit (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_023461	I	309	V	ADH4_HUMAN	Polymorphism	1126671	A/B/C/D	V	309	V
2	UniProt	VAR_023462	R	318	H	ADH4_HUMAN	Polymorphism	29001219	A/B/C/D	R	318	H
3	UniProt	VAR_023463	V	374	I	ADH4_HUMAN	Polymorphism	1126673	A/B/C/D	I	374	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (3, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_023461	I	309	V	ADH4_HUMAN	Polymorphism	1126671	A/B	V	309	V
2	UniProt	VAR_023462	R	318	H	ADH4_HUMAN	Polymorphism	29001219	A/B	R	318	H
3	UniProt	VAR_023463	V	374	I	ADH4_HUMAN	Polymorphism	1126673	A/B	I	374	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (3, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_023461	I	309	V	ADH4_HUMAN	Polymorphism	1126671	C/D	V	309	V
2	UniProt	VAR_023462	R	318	H	ADH4_HUMAN	Polymorphism	29001219	C/D	R	318	H
3	UniProt	VAR_023463	V	374	I	ADH4_HUMAN	Polymorphism	1126673	C/D	I	374	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_ZINC	PS00059	Zinc-containing alcohol dehydrogenases signature.	ADH4_HUMAN	68-82	4	A:68-82 B:68-82 C:68-82 D:68-82

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_ZINC	PS00059	Zinc-containing alcohol dehydrogenases signature.	ADH4_HUMAN	68-82	2	A:68-82 B:68-82 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_ZINC	PS00059	Zinc-containing alcohol dehydrogenases signature.	ADH4_HUMAN	68-82	2	- - C:68-82 D:68-82

(no "Exon" information available for 3COS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:379
 aligned with ADH4_HUMAN | P08319 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:379
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371         
           ADH4_HUMAN     2 GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTIFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSVRTILIF 380
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3cosA01 A:2-184,A:324-380 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                                        3cosA02 A:185-323 NAD(P)-binding Rossmann-like Domain                                                                                      3cosA01 A:2-184,A:324-380                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee........eeeeeee......eeeeeeeeee.hhhhhhh................eeeeeeeee...........eeee...........................hhhhh..........eee..eee...........eeeee...eee.....hhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeehhhhh..hhhhhhhhhh.....eeee...hhhhhhhhhhh.....eeeee.........eeehhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..hhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------H-------------------------------------------------------I------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ADH_ZINC       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cos A   2 GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTILIF 380
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371

Chain B from PDB  Type:PROTEIN  Length:379
 aligned with ADH4_HUMAN | P08319 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:379
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371         
           ADH4_HUMAN     2 GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTIFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSVRTILIF 380
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3cosB01 B:2-184,B:324-380 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                                        3cosB02 B:185-323 NAD(P)-binding Rossmann-like Domain                                                                                      3cosB01 B:2-184,B:324-380                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee........eeeeeee......eeeeeeeeee.hhhhhhhh...............eeeeeeeee...........eeee...........................hhhhh..........eee..eee...........eeeee...eee.....hhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeehhhhh..hhhhhhhhhhh....eeee...hhhhhhhhhhh.....eeeee.........eeehhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..hhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------H-------------------------------------------------------I------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ADH_ZINC       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cos B   2 GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTILIF 380
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371

Chain C from PDB  Type:PROTEIN  Length:379
 aligned with ADH4_HUMAN | P08319 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:379
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371         
           ADH4_HUMAN     2 GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTIFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSVRTILIF 380
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3cosC01 C:2-184,C:324-380 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                                        3cosC02 C:185-323 NAD(P)-binding Rossmann-like Domain                                                                                      3cosC01 C:2-184,C:324-380                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee........eeeeeee......eeeeeeeeee.hhhhhhh................eeeeeeeee...........eeee...........................hhhhh..........eee..eee...........eeeee...eee.....hhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeehhhhh..hhhhhhhhhh.....eeee...hhhhhhhhhhh.....eeeee.........eeehhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..hhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------H-------------------------------------------------------I------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ADH_ZINC       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cos C   2 GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTILIF 380
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371

Chain D from PDB  Type:PROTEIN  Length:381
 aligned with ADH4_HUMAN | P08319 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:381
                             1                                                                                                                                                                                                                                                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379 
           ADH4_HUMAN     - -MGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTIFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSVRTILIF 380
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3cosD01 D:0-184,D:324-380 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                                          3cosD02 D:185-323 NAD(P)-binding Rossmann-like Domain                                                                                      3cosD01 D:0-184,D:324-380                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee........eeeeeee......eeeeeeeeee.hhhhhhhh...............eeeeeeeee...........eeee...........................hhhhh..........eee..eee...........eeeee...eee.....hhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeehhhhh..hhhhhhhhhh.....eeee...hhhhhhhhhhh.....eeeee.........eee.hhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..hhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------H-------------------------------------------------------I------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------ADH_ZINC       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cos D   0 SMGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTILIF 380
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3COS)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Human (Homo sapiens) (188)

1a	3cosA02	A:185-323
1b	3cosB02	B:185-323
1c	3cosC02	C:185-323
1d	3cosD02	D:185-323

Architecture: Alpha-Beta Complex (3881)

Topology: Quinone Oxidoreductase; Chain A, domain 1 (131)

Homologous Superfamily: Medium-chain alcohol dehydrogenases, catalytic domain (131)

Human (Homo sapiens) (30)

2a	3cosA01	A:2-184,A:324-380
2b	3cosB01	B:2-184,B:324-380
2c	3cosC01	C:2-184,C:324-380
2d	3cosD01	D:0-184,D:324-380

(no "Pfam Domain" information available for 3COS)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ADH4_HUMAN | P08319)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0003960	NADPH:quinone reductase activity	Catalysis of the reaction: NADPH + H+ + quinone = NADP+ + semiquinone.
	GO:0004022	alcohol dehydrogenase (NAD) activity	Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.
	GO:0004024	alcohol dehydrogenase activity, zinc-dependent	Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+, requiring the presence of zinc.
	GO:0004032	alditol:NADP+ 1-oxidoreductase activity	Catalysis of the reaction: an alditol + NADP+ = an aldose + NADPH + H+.
	GO:0005503	all-trans retinal binding	Interacting selectively and non-covalently with all-trans retinal, a compound that plays an important role in the visual process in most vertebrates. All-trans retinal (trans r., visual yellow) results from the bleaching of rhodopsin by light, in which the 11-cis form is converted to the all-trans form. Retinal is one of the forms of vitamin A.
	GO:0019115	benzaldehyde dehydrogenase activity	Catalysis of the reaction: benzaldehyde + NAD(P)+ + H2O = benzoate + NAD(P)H + H+.
	GO:0035276	ethanol binding	Interacting selectively and non-covalently with ethanol, CH(3)-CH(2)-OH.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
	GO:0019841	retinol binding	Interacting selectively and non-covalently with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation.
	GO:0004745	retinol dehydrogenase activity	Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0046164	alcohol catabolic process	The chemical reactions and pathways resulting in the breakdown of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.
	GO:0006066	alcohol metabolic process	The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.
	GO:0006081	cellular aldehyde metabolic process	The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells.
	GO:0006067	ethanol metabolic process	The chemical reactions and pathways involving ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation.
	GO:0006069	ethanol oxidation	An ethanol metabolic process in which ethanol is converted to acetyl-CoA via acetaldehyde and acetate.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:1901661	quinone metabolic process	The chemical reactions and pathways involving quinone.
	GO:0001523	retinoid metabolic process	The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
	GO:0042572	retinol metabolic process	The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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