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(-) Description

Title :  CRYSTAL STRUCTURE OF AD16 FIBER KNOB
 
Authors :  L. Pache, S. Venkataraman, G. R. Nemerow, V. S. Reddy
Date :  25 Mar 08  (Deposition) - 17 Jun 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Adenovirus Fiber Knob, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Pache, S. Venkataraman, V. S. Reddy, G. R. Nemerow
Structural Variations In Species B Adenovirus Fibers Impact Cd46 Association
J. Virol. V. 82 7923 2008
PubMed-ID: 18524830  |  Reference-DOI: 10.1128/JVI.00754-08
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FIBER PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A(+)
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 151-353
    Gene: L5
    Organism Common: VIRUS
    Organism Scientific: HUMAN ADENOVIRUS 16
    Synonym: SEROTYPE 16 FIBER

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3CNC)

(-) Sites  (0, 0)

(no "Site" information available for 3CNC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CNC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3CNC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CNC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CNC)

(-) Exons   (0, 0)

(no "Exon" information available for 3CNC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
 aligned with Q67711_ADE16 | Q67711 from UniProtKB/TrEMBL  Length:353

    Alignment length:196
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      
         Q67711_ADE16   158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
               SCOP domains d3cnca_ A: automated matches                                                                                                                                                                         SCOP domains
               CATH domains 3cncA00 A:158-353 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...................eeeeeeeeee..eeeeeeeeee......hhhhh.eeeeeeeeee......hhhhh......eeee..ee.......hhhhh...............hhh.eeeeeeeee.....eeeeeeeeee..........eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cnc A 158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      


Chain B from PDB  Type:PROTEIN  Length:196
 aligned with Q67711_ADE16 | Q67711 from UniProtKB/TrEMBL  Length:353

    Alignment length:196
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      
         Q67711_ADE16   158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
               SCOP domains d3cncb_ B: automated matches                                                                                                                                                                         SCOP domains
               CATH domains 3cncB00 B:158-353 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...................eeeeeeeeee..eeeeeeeeee......hhhhh.eeeeee..ee.................eeee..ee.......hhhhh...............hhh.eeeeeeeee.....eeeeeeeeee..........eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cnc B 158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      


Chain C from PDB  Type:PROTEIN  Length:196
 aligned with Q67711_ADE16 | Q67711 from UniProtKB/TrEMBL  Length:353

    Alignment length:196
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      
         Q67711_ADE16   158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
               SCOP domains d3cncc_ C: automated matches                                                                                                                                                                         SCOP domains
               CATH domains 3cncC00 C:158-353 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeeee.....hhhhh......eeee..ee.......hhhhh...............hhh.eeeeeeeee.....eeeeeeeeee........eeeeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cnc C 158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      


Chain D from PDB  Type:PROTEIN  Length:196
 aligned with Q67711_ADE16 | Q67711 from UniProtKB/TrEMBL  Length:353

    Alignment length:196
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      
         Q67711_ADE16   158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
               SCOP domains d3cncd_ D: automated matches                                                                                                                                                                         SCOP domains
               CATH domains 3cncD00 D:158-353 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...................eeeeeeeeee..eeeeeeeeee......hhhhh.eeeeeeeeee......hhhhh......eeee..ee.......hhhhh...............hhh.eeeeeeeee.....eeeeeeeeee..........eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cnc D 158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      


Chain E from PDB  Type:PROTEIN  Length:196
 aligned with Q67711_ADE16 | Q67711 from UniProtKB/TrEMBL  Length:353

    Alignment length:196
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      
         Q67711_ADE16   158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
               SCOP domains d3cnce_ E: automated matches                                                                                                                                                                         SCOP domains
               CATH domains 3cncE00 E:158-353 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...................eeeeeeeeee..eeeeeeeeee......hhhhh.eeeeeeeeee.................eeee..ee.......hhhhh...............hhh.eeeeeeeee.....eeeeeeeeee..........eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cnc E 158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      


Chain F from PDB  Type:PROTEIN  Length:196
 aligned with Q67711_ADE16 | Q67711 from UniProtKB/TrEMBL  Length:353

    Alignment length:196
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      
         Q67711_ADE16   158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
               SCOP domains d3cncf_ F: automated matches                                                                                                                                                                         SCOP domains
               CATH domains 3cncF00 F:158-353 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee......hhhhh......eeee..ee.......hhhhh...............hhh.eeeeeeeee.....eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cnc F 158 IENNTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNTGQIITYLSSLKSNLNFKDNQNMATGTITSAKGFMPSTTAYPFITYATETLNEDYIYGECYYKSTNGTLFPLKVTVTLNRRMLASGMAYAMNFSWSLNAEEAPETTEVTLITSPFFFSYIREDD 353
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CNC)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q67711_ADE16 | Q67711)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

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