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(-) Description

Title :  MECHANISM OF HOMOLOGOUS RECOMBINATION FROM THE RECA-SSDNA/DSDNA STRUCTURES
 
Authors :  N. P. Pavletich
Date :  24 Mar 08  (Deposition) - 20 May 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Homologous Recombination, Recombination (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Chen, H. Yang, N. P. Pavletich
Mechanism Of Homologous Recombination From The Reca-Ssdna/Dsdna Structures.
Nature V. 453 489 2008
PubMed-ID: 18497818  |  Reference-DOI: 10.1038/NATURE06971
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN RECA
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Synonym: RECOMBINASE A

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 64)

Asymmetric Unit (2, 64)
No.NameCountTypeFull Name
1ANP32Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG32Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 5 (1, 4)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 6 (1, 4)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 7 (1, 4)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 8 (1, 4)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (64, 64)

Asymmetric Unit (64, 64)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:73 , ALA A:98 , ASP A:144BINDING SITE FOR RESIDUE MG A 701
02AC2SOFTWARETHR A:1073 , ALA A:1098 , ASP A:1144BINDING SITE FOR RESIDUE MG A 1701
03AC3SOFTWARETHR A:2073 , LEU A:2099 , ASP A:2144BINDING SITE FOR RESIDUE MG A 2701
04AC4SOFTWARETHR A:3073 , ASP A:3144BINDING SITE FOR RESIDUE MG A 3701
05AC5SOFTWARETHR B:73 , ALA B:98 , ASP B:144BINDING SITE FOR RESIDUE MG B 701
06AC6SOFTWARETHR B:1073 , ALA B:1098 , LEU B:1099 , ASP B:1144BINDING SITE FOR RESIDUE MG B 1701
07AC7SOFTWARETHR B:2073 , ALA B:2098 , LEU B:2099 , ASP B:2144BINDING SITE FOR RESIDUE MG B 2701
08AC8SOFTWARETHR B:3073 , ASP B:3144BINDING SITE FOR RESIDUE MG B 3701
09AC9SOFTWARETHR C:73 , ALA C:98 , ASP C:144BINDING SITE FOR RESIDUE MG C 701
10BC1SOFTWARETHR C:1073 , ALA C:1098 , ASP C:1144BINDING SITE FOR RESIDUE MG C 1701
11BC2SOFTWARETHR C:2073 , ALA C:2098 , LEU C:2099 , ASP C:2144BINDING SITE FOR RESIDUE MG C 2701
12BC3SOFTWARETHR C:3073 , ASP C:3144BINDING SITE FOR RESIDUE MG C 3701
13BC4SOFTWARETHR D:73 , ALA D:98 , ASP D:144BINDING SITE FOR RESIDUE MG D 701
14BC5SOFTWARETHR D:1073 , ALA D:1098 , LEU D:1099 , ASP D:1144BINDING SITE FOR RESIDUE MG D 1701
15BC6SOFTWARETHR D:2073 , ALA D:2098 , LEU D:2099 , ASP D:2144BINDING SITE FOR RESIDUE MG D 2701
16BC7SOFTWARETHR D:3073 , ASP D:3144BINDING SITE FOR RESIDUE MG D 3701
17BC8SOFTWARETHR E:73 , ALA E:98 , ASP E:144BINDING SITE FOR RESIDUE MG E 701
18BC9SOFTWARETHR E:1073 , ALA E:1098 , LEU E:1099 , ASP E:1144BINDING SITE FOR RESIDUE MG E 1701
19CC1SOFTWARETHR E:2073 , LEU E:2099 , ASP E:2144BINDING SITE FOR RESIDUE MG E 2701
20CC2SOFTWARETHR E:3073 , ASP E:3144BINDING SITE FOR RESIDUE MG E 3701
21CC3SOFTWARETHR F:73 , ASP F:144BINDING SITE FOR RESIDUE MG F 701
22CC4SOFTWARETHR F:1073 , ALA F:1098 , LEU F:1099 , ASP F:1144BINDING SITE FOR RESIDUE MG F 1701
23CC5SOFTWARETHR F:2073 , ALA F:2098 , LEU F:2099 , ASP F:2144BINDING SITE FOR RESIDUE MG F 2701
24CC6SOFTWARETHR F:3073 , ASP F:3144BINDING SITE FOR RESIDUE MG F 3701
25CC7SOFTWARETHR G:73 , ALA G:98 , ASP G:144BINDING SITE FOR RESIDUE MG G 701
26CC8SOFTWARETHR G:1073 , ALA G:1098 , LEU G:1099 , ASP G:1144BINDING SITE FOR RESIDUE MG G 1701
27CC9SOFTWARETHR G:2073 , ALA G:2098 , LEU G:2099 , ASP G:2144BINDING SITE FOR RESIDUE MG G 2701
28DC1SOFTWARETHR G:3073 , ASP G:3144BINDING SITE FOR RESIDUE MG G 3701
29DC2SOFTWARETHR H:73 , ALA H:98 , ASP H:144BINDING SITE FOR RESIDUE MG H 701
30DC3SOFTWARETHR H:1073 , ALA H:1098 , LEU H:1099 , ASP H:1144BINDING SITE FOR RESIDUE MG H 1701
31DC4SOFTWARETHR H:2073 , ALA H:2098 , LEU H:2099 , ASP H:2144BINDING SITE FOR RESIDUE MG H 2701
32DC5SOFTWARETHR H:3073 , ASP H:3144BINDING SITE FOR RESIDUE MG H 3701
33DC6SOFTWAREGLU A:68 , SER A:69 , SER A:70 , GLY A:71 , LYS A:72 , THR A:73 , THR A:74 , ASP A:100 , TYR A:103 , TYR A:264BINDING SITE FOR RESIDUE ANP A 400
34DC7SOFTWAREGLU A:1068 , SER A:1069 , SER A:1070 , GLY A:1071 , LYS A:1072 , THR A:1073 , THR A:1074 , ASP A:1100 , TYR A:1103 , TYR A:1264 , GLY A:1265BINDING SITE FOR RESIDUE ANP A 1400
35DC8SOFTWAREGLU A:2068 , SER A:2069 , SER A:2070 , GLY A:2071 , LYS A:2072 , THR A:2073 , THR A:2074 , GLU A:2096 , ASP A:2100 , TYR A:2264BINDING SITE FOR RESIDUE ANP A 2400
36DC9SOFTWAREGLU A:3068 , SER A:3069 , GLY A:3071 , LYS A:3072 , THR A:3073 , THR A:3074 , GLU A:3096 , ASP A:3100 , TYR A:3103 , GLN A:3194 , TYR A:3264BINDING SITE FOR RESIDUE ANP A 3400
37EC1SOFTWAREGLU B:68 , SER B:69 , GLY B:71 , LYS B:72 , THR B:73 , THR B:74 , ASP B:100 , TYR B:103 , TYR B:264BINDING SITE FOR RESIDUE ANP B 400
38EC2SOFTWAREGLU B:1068 , SER B:1069 , SER B:1070 , GLY B:1071 , LYS B:1072 , THR B:1073 , THR B:1074 , GLU B:1096 , ASP B:1100BINDING SITE FOR RESIDUE ANP B 1400
39EC3SOFTWAREGLU B:2068 , SER B:2069 , SER B:2070 , GLY B:2071 , LYS B:2072 , THR B:2073 , THR B:2074 , GLU B:2096 , ASP B:2100 , TYR B:2264BINDING SITE FOR RESIDUE ANP B 2400
40EC4SOFTWAREPRO B:3067 , GLU B:3068 , SER B:3069 , SER B:3070 , GLY B:3071 , LYS B:3072 , THR B:3073 , THR B:3074 , GLU B:3096 , ASP B:3100 , TYR B:3103 , GLN B:3194 , TYR B:3264BINDING SITE FOR RESIDUE ANP B 3400
41EC5SOFTWAREGLU C:68 , SER C:69 , SER C:70 , GLY C:71 , LYS C:72 , THR C:73 , THR C:74 , GLU C:96 , ASP C:100 , TYR C:103BINDING SITE FOR RESIDUE ANP C 400
42EC6SOFTWAREGLU C:1068 , SER C:1069 , SER C:1070 , GLY C:1071 , LYS C:1072 , THR C:1073 , THR C:1074 , GLU C:1096 , ASP C:1100BINDING SITE FOR RESIDUE ANP C 1400
43EC7SOFTWAREGLU C:2068 , SER C:2069 , SER C:2070 , GLY C:2071 , LYS C:2072 , THR C:2073 , THR C:2074 , GLU C:2096 , ASP C:2100 , TYR C:2264BINDING SITE FOR RESIDUE ANP C 2400
44EC8SOFTWARESER C:3069 , GLY C:3071 , LYS C:3072 , THR C:3073 , THR C:3074 , GLU C:3096 , ASP C:3100 , TYR C:3103 , GLN C:3194 , TYR C:3264BINDING SITE FOR RESIDUE ANP C 3400
45EC9SOFTWAREGLU D:68 , SER D:69 , SER D:70 , GLY D:71 , LYS D:72 , THR D:73 , THR D:74 , ASP D:100 , SER D:240 , TYR D:264BINDING SITE FOR RESIDUE ANP D 400
46FC1SOFTWAREGLU D:1068 , SER D:1069 , SER D:1070 , GLY D:1071 , LYS D:1072 , THR D:1073 , THR D:1074 , GLU D:1096 , ASP D:1100BINDING SITE FOR RESIDUE ANP D 1400
47FC2SOFTWAREGLU D:2068 , SER D:2069 , SER D:2070 , GLY D:2071 , LYS D:2072 , THR D:2073 , THR D:2074 , GLU D:2096 , ASP D:2100 , TYR D:2264BINDING SITE FOR RESIDUE ANP D 2400
48FC3SOFTWAREPRO D:3067 , GLU D:3068 , SER D:3069 , SER D:3070 , GLY D:3071 , LYS D:3072 , THR D:3073 , THR D:3074 , GLU D:3096 , ASP D:3100 , TYR D:3103 , GLN D:3194 , TYR D:3264BINDING SITE FOR RESIDUE ANP D 3400
49FC4SOFTWAREGLU E:68 , SER E:69 , GLY E:71 , LYS E:72 , THR E:73 , THR E:74 , GLU E:96 , ASP E:100BINDING SITE FOR RESIDUE ANP E 400
50FC5SOFTWARESER E:1069 , SER E:1070 , GLY E:1071 , LYS E:1072 , THR E:1073 , THR E:1074 , GLU E:1096 , ASP E:1100 , GLY E:1265BINDING SITE FOR RESIDUE ANP E 1400
51FC6SOFTWAREGLU E:2068 , SER E:2069 , SER E:2070 , GLY E:2071 , LYS E:2072 , THR E:2073 , THR E:2074 , GLU E:2096 , ASP E:2100 , TYR E:2264BINDING SITE FOR RESIDUE ANP E 2400
52FC7SOFTWAREPRO E:3067 , GLU E:3068 , SER E:3069 , SER E:3070 , GLY E:3071 , LYS E:3072 , THR E:3073 , THR E:3074 , GLU E:3096 , ASP E:3100 , TYR E:3103 , GLN E:3194 , TYR E:3264BINDING SITE FOR RESIDUE ANP E 3400
53FC8SOFTWAREGLU F:68 , SER F:69 , SER F:70 , GLY F:71 , LYS F:72 , THR F:73 , THR F:74 , ASP F:100 , TYR F:103BINDING SITE FOR RESIDUE ANP F 400
54FC9SOFTWARESER F:1069 , SER F:1070 , GLY F:1071 , LYS F:1072 , THR F:1073 , THR F:1074 , GLU F:1096 , ASP F:1100BINDING SITE FOR RESIDUE ANP F 1400
55GC1SOFTWAREGLU F:2068 , SER F:2069 , SER F:2070 , GLY F:2071 , LYS F:2072 , THR F:2073 , THR F:2074 , GLU F:2096 , ASP F:2100 , TYR F:2264BINDING SITE FOR RESIDUE ANP F 2400
56GC2SOFTWAREPRO F:3067 , GLU F:3068 , SER F:3069 , SER F:3070 , GLY F:3071 , LYS F:3072 , THR F:3073 , THR F:3074 , GLU F:3096 , ASP F:3100 , TYR F:3103 , GLN F:3194 , TYR F:3264BINDING SITE FOR RESIDUE ANP F 3400
57GC3SOFTWAREGLU G:68 , SER G:69 , SER G:70 , GLY G:71 , LYS G:72 , THR G:73 , THR G:74 , ASP G:100 , TYR G:103 , SER G:240 , TYR G:264 , GLY G:265BINDING SITE FOR RESIDUE ANP G 400
58GC4SOFTWAREGLU G:1068 , SER G:1069 , SER G:1070 , GLY G:1071 , LYS G:1072 , THR G:1073 , THR G:1074 , GLU G:1096 , ASP G:1100BINDING SITE FOR RESIDUE ANP G 1400
59GC5SOFTWAREGLU G:2068 , SER G:2069 , SER G:2070 , GLY G:2071 , LYS G:2072 , THR G:2073 , THR G:2074 , GLU G:2096 , ASP G:2100 , TYR G:2264BINDING SITE FOR RESIDUE ANP G 2400
60GC6SOFTWAREGLU G:3068 , SER G:3069 , SER G:3070 , GLY G:3071 , LYS G:3072 , THR G:3073 , THR G:3074 , GLU G:3096 , ASP G:3100 , TYR G:3103 , TYR G:3264BINDING SITE FOR RESIDUE ANP G 3400
61GC7SOFTWAREGLU H:68 , SER H:69 , SER H:70 , GLY H:71 , LYS H:72 , THR H:73 , THR H:74 , ASP H:100 , TYR H:103 , TYR H:264BINDING SITE FOR RESIDUE ANP H 400
62GC8SOFTWAREGLU H:1068 , SER H:1069 , SER H:1070 , GLY H:1071 , LYS H:1072 , THR H:1073 , THR H:1074 , GLU H:1096 , ASP H:1100 , GLY H:1265BINDING SITE FOR RESIDUE ANP H 1400
63GC9SOFTWAREGLU H:2068 , SER H:2069 , SER H:2070 , GLY H:2071 , LYS H:2072 , THR H:2073 , THR H:2074 , GLU H:2096 , ASP H:2100 , TYR H:2264BINDING SITE FOR RESIDUE ANP H 2400
64HC1SOFTWAREPRO H:3067 , GLU H:3068 , SER H:3069 , SER H:3070 , GLY H:3071 , LYS H:3072 , THR H:3073 , THR H:3074 , GLU H:3096 , TYR H:3103 , GLN H:3194 , TYR H:3264BINDING SITE FOR RESIDUE ANP H 3400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CMV)

(-) Cis Peptide Bonds  (32, 32)

Asymmetric Unit
No.Residues
1Asp A:144 -Ser A:145
2Asp A:1144 -Ser A:1145
3Asp A:2144 -Ser A:2145
4Asp A:3144 -Ser A:3145
5Asp B:144 -Ser B:145
6Asp B:1144 -Ser B:1145
7Asp B:2144 -Ser B:2145
8Asp B:3144 -Ser B:3145
9Asp C:144 -Ser C:145
10Asp C:1144 -Ser C:1145
11Asp C:2144 -Ser C:2145
12Asp C:3144 -Ser C:3145
13Asp D:144 -Ser D:145
14Asp D:1144 -Ser D:1145
15Asp D:2144 -Ser D:2145
16Asp D:3144 -Ser D:3145
17Asp E:144 -Ser E:145
18Asp E:1144 -Ser E:1145
19Asp E:2144 -Ser E:2145
20Asp E:3144 -Ser E:3145
21Asp F:144 -Ser F:145
22Asp F:1144 -Ser F:1145
23Asp F:2144 -Ser F:2145
24Asp F:3144 -Ser F:3145
25Asp G:144 -Ser G:145
26Asp G:1144 -Ser G:1145
27Asp G:2144 -Ser G:2145
28Asp G:3144 -Ser G:3145
29Asp H:144 -Ser H:145
30Asp H:1144 -Ser H:1145
31Asp H:2144 -Ser H:2145
32Asp H:3144 -Ser H:3145

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CMV)

(-) PROSITE Motifs  (3, 24)

Asymmetric Unit (3, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RECA_ECOLI37-196
 
 
 
 
 
 
 		  8A:1036-1195
B:1036-1194
C:1036-1194
D:1036-1194
E:1036-1194
F:1036-1194
G:1036-1194
H:1036-1194
2RECA_3PS50163 RecA family profile 2.RECA_ECOLI201-274
 
 
 
 
 
 
 		  8A:1200-1273
B:1265-2273
C:1265-2273
D:1265-2273
E:1265-2273
F:1265-2273
G:1265-2273
H:1265-2273
3RECA_1PS00321 recA signature.RECA_ECOLI215-223
 
 
 
 
 
 
 		  8A:1214-1222
B:2214-2222
C:2214-2222
D:2214-2222
E:2214-2222
F:2214-2222
G:2214-2222
H:2214-2222
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RECA_ECOLI37-196
 
 
 
 
 
 
 		  1A:1036-1195
-
-
-
-
-
-
-
2RECA_3PS50163 RecA family profile 2.RECA_ECOLI201-274
 
 
 
 
 
 
 		  1A:1200-1273
-
-
-
-
-
-
-
3RECA_1PS00321 recA signature.RECA_ECOLI215-223
 
 
 
 
 
 
 		  1A:1214-1222
-
-
-
-
-
-
-
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RECA_ECOLI37-196
 
 
 
 
 
 
 		  1-
B:1036-1194
-
-
-
-
-
-
2RECA_3PS50163 RecA family profile 2.RECA_ECOLI201-274
 
 
 
 
 
 
 		  1-
B:1265-2273
-
-
-
-
-
-
3RECA_1PS00321 recA signature.RECA_ECOLI215-223
 
 
 
 
 
 
 		  1-
B:2214-2222
-
-
-
-
-
-
Biological Unit 3 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RECA_ECOLI37-196
 
 
 
 
 
 
 		  1-
-
C:1036-1194
-
-
-
-
-
2RECA_3PS50163 RecA family profile 2.RECA_ECOLI201-274
 
 
 
 
 
 
 		  1-
-
C:1265-2273
-
-
-
-
-
3RECA_1PS00321 recA signature.RECA_ECOLI215-223
 
 
 
 
 
 
 		  1-
-
C:2214-2222
-
-
-
-
-
Biological Unit 4 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RECA_ECOLI37-196
 
 
 
 
 
 
 		  1-
-
-
D:1036-1194
-
-
-
-
2RECA_3PS50163 RecA family profile 2.RECA_ECOLI201-274
 
 
 
 
 
 
 		  1-
-
-
D:1265-2273
-
-
-
-
3RECA_1PS00321 recA signature.RECA_ECOLI215-223
 
 
 
 
 
 
 		  1-
-
-
D:2214-2222
-
-
-
-
Biological Unit 5 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RECA_ECOLI37-196
 
 
 
 
 
 
 		  1-
-
-
-
E:1036-1194
-
-
-
2RECA_3PS50163 RecA family profile 2.RECA_ECOLI201-274
 
 
 
 
 
 
 		  1-
-
-
-
E:1265-2273
-
-
-
3RECA_1PS00321 recA signature.RECA_ECOLI215-223
 
 
 
 
 
 
 		  1-
-
-
-
E:2214-2222
-
-
-
Biological Unit 6 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RECA_ECOLI37-196
 
 
 
 
 
 
 		  1-
-
-
-
-
F:1036-1194
-
-
2RECA_3PS50163 RecA family profile 2.RECA_ECOLI201-274
 
 
 
 
 
 
 		  1-
-
-
-
-
F:1265-2273
-
-
3RECA_1PS00321 recA signature.RECA_ECOLI215-223
 
 
 
 
 
 
 		  1-
-
-
-
-
F:2214-2222
-
-
Biological Unit 7 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RECA_ECOLI37-196
 
 
 
 
 
 
 		  1-
-
-
-
-
-
G:1036-1194
-
2RECA_3PS50163 RecA family profile 2.RECA_ECOLI201-274
 
 
 
 
 
 
 		  1-
-
-
-
-
-
G:1265-2273
-
3RECA_1PS00321 recA signature.RECA_ECOLI215-223
 
 
 
 
 
 
 		  1-
-
-
-
-
-
G:2214-2222
-
Biological Unit 8 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RECA_ECOLI37-196
 
 
 
 
 
 
 		  1-
-
-
-
-
-
-
H:1036-1194
2RECA_3PS50163 RecA family profile 2.RECA_ECOLI201-274
 
 
 
 
 
 
 		  1-
-
-
-
-
-
-
H:1265-2273
3RECA_1PS00321 recA signature.RECA_ECOLI215-223
 
 
 
 
 
 
 		  1-
-
-
-
-
-
-
H:2214-2222

(-) Exons   (0, 0)

(no "Exon" information available for 3CMV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1190
 aligned with RECA_ECOLI | P0A7G6 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:1190
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  345                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                          1    6                7                                                                                                                                                                                                                                                                                                                               329                             330        341                 342  |      346   352   353                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -    |    6         -      | 10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320        |-         -         -         -|      339 |       -         - |  |    -   |   352     |   -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -
          RECA_ECOLI      - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAIDEN----------------KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL-------------------------------SNPNSTPDFSVD-------------------DSEG--------VAETNED-----F------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhh.eeee...hhhhhhhhhhhhhhh....eeeeehhhhh.hhhhhh.........hhhhhhhhhhhhhhhh......eeeeee....hhhhheeeeeeeee.............eeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhhh..........hhhhhhhhhhhhhhhhh...eeeeee....................hhhhhh.eeeee......ee..ee.eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.........hhhhhhhhhhhhhhh.....eeeeee....hhhhheeeeeeeee...ee....eeeeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee..........ee.....hhhhhh....ee...eeeee.....hhhhhhhhhhhhhhh....eeee......hhhhhhhhh.hhhhh......hhhhhhhhhhhhhh.....eeee.hhhhh......hhhhhhhhhhhhhhhhh.eeeeee....hhhhhh.eeeeeee...........eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_2  PDB: A:1036-1195 UniProt: 37-196                                                                                                                        ----RECA_3  PDB: A:1200-1273 UniProt: 201-274                                 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_1   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmv A   37 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 3328
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       212       222       232       242       252       262       272       282       292       302       312       322     |1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      1289      1299      1309      1319      2006      2016      2026      2036      2046      2056      2066      2076      2086      2096      2106      2116      2126      2136      2146      2165      2175      2185      2211      2221      2231      2241      2251      2261      2271      2281      2291      2301      2311      2321      3008      3018      3028      3038      3048      3058      3068      3078      3088      3098      3108      3118      3128      3138      3148  ||  3172      3182      3192 ||   3218      3228      3238      3248      3258      3268      3278      3288      3298      3308      3318      3328
                                                                                                                                                                                       194|                                                                                                                  328|                                                                                                                                                                                                                                                                                                                              1328|                                                                                                                                                 2155|                         2194|                                                                                                                 2328|                                                                                                                                             3151|                        3194|                                                                                                                     
                                                                                                                                                                                        211                                                                                                                  1006                                                                                                                                                                                                                                                                                                                               2006                                                                                                                                                  2165                          2211                                                                                                                  3006                                                                                                                                              3166                         3211                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:1163
 aligned with RECA_ECOLI | P0A7G6 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:1172
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          345                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                        1    6                7                                                                                                                                                                                         195        196  201                                 202 206                                                                                                                         207 211                                                                                                                212                                                                                                                  329                             330        341                 342  |      346   352   353                                                                                                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -  |    | -         -    |   12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192  |      -   |    |-         -         -         -    |   |-         -         -         -         -         -         -         -         -         -         -         -         -  |   |  -         -         -         -         -         -         -         -         -         -         -         - |     220       230       240       250       260       270       280       290       300       310       320        |-         -         -         -|      339 |       -         - |  |    -   |   352     |   -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -  
          RECA_ECOLI      - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAIDEN----------------KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ----------IRMKIG-----------------------------------VMFGN---------------------------------------------------------------------------------------------------------------------------PETTT------------------------------------------------------------------------------------------------------------------GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL-------------------------------SNPNSTPDFSVD-------------------DSEG--------VAETNED-----F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhh.eeee...hhhhhhhhhhhhhhh....eeeeehhhhh.hhhhhh.......hhhhhhhhhhhhhhhh......eeeeee....hhhhheeeeeeeee.............eeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh......---------...hhhhhhhhhhhhhhhhh...eeeeee....hhhhhh.eeeee......ee..ee.eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.........hhhhhhhhhhhhhhh.....eeeeee....hhhhheeeeeeeee...ee....eeeeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee..........ee.....hhhhhh....ee...eeeee.....hhhhhhhhhhhhhhh....eeee......hhhhhhhhh.hhhhh......hhhhhhhhhhhhhhh....eeee.hhhhh......hhhhhhhhhhhhhhhhh.eeeeee....hhhhhh.eeeeeee...........eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_2  PDB: B:1036-1194 UniProt: 37-196                                                                                                                                  ----RECA_3  PDB: B:1265-2273 UniProt: 201-274                                                                                                                                                                                                                                                                                                                 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_1   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmv B   37 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEISHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI---------GLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 3328
                                    46        56        66        76        86        96       106       116       126       136       146       156  ||   168       178       188     ||214       224       234       244       254       264       274       284       294       304       314       324   || 1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151   |     -   |  1171      1181      1191  ||  1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327||    2014      2024      2034      2044      2054      2064      2074      2084      2094      2104      2114      2124      2134      2144      2154||    2173      2183      2193||    2219      2229      2239      2249      2259      2269      2279      2289      2299      2309      2319      3006      3016      3026      3036      3046      3056      3066      3076      3086      3096      3106      3116      3126      3136      3146    ||3170      3180      3190   || 3216      3226      3236      3246      3256      3266      3276      3286      3296      3306      3316      3326  
                                                                                                                                                    159|                             194|                                                                                                                  328|                                                                                                                                                 1155      1165                         1194|                                                                                                                 1328|                                                                                                                                                 2155|                         2194|                                                                                                                 2328|                                                                                                                                             3151|                        3194|                                                                                                                     
                                                                                                                                                     162                              211                                                                                                                  1006                                                                                                                                                                                         1211                                                                                                                  2006                                                                                                                                                  2165                          2211                                                                                                                  3006                                                                                                                                              3166                         3211                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:1175
 aligned with RECA_ECOLI | P0A7G6 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:1175
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             345                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                          1    6                7                                                                                                                                                                                         195        196  201                                 202 206                                                                                                                         207 211                                                                                                                 212                                                                                                                  329                             330        341                 342  |      346   352   353                                                                                                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -    |    6         -      | 10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    |    -     | 200|        -         -         -      |205|        -         -         -         -         -         -         -         -         -         -         -         -    |   |-         -         -         -         -         -         -         -         -         -         -         -    |  217       227       237       247       257       267       277       287       297       307       317       327 |       -         -         -   |   336    |    -         -    |  | -      |349  |     |-         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -     
          RECA_ECOLI      - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAIDEN----------------KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ----------IRMKIG-----------------------------------VMFGN---------------------------------------------------------------------------------------------------------------------------PETTT-------------------------------------------------------------------------------------------------------------------GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL-------------------------------SNPNSTPDFSVD-------------------DSEG--------VAETNED-----F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhh.eeee...hhhhhhhhhhhhhhh....eeeeehhhhh.hhhhhh.........hhhhhhhhhhhhhhhh......eeeeee....hhhhheeeeeeeee.............eeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh...........hhhhhhhhhhhhhhhhh...eeeeee....hhhhhh.eeeee......ee..ee.eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh...hhhhhhhhhhhhhhhhh...eeeeee....hhhhheeeeeeeee...ee....eeeeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee..........ee.....hhhhhh....ee...eeeee.....hhhhhhhhhhhhhhh....eeee......hhhhhhhhh.hhhhh......hhhhhhhhhhhhhhh....eeee.hhhhh......hhhhhhhhhhhhhhhhh.eeeeee....hhhhhh.eeeeeee...........eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_2  PDB: C:1036-1194 UniProt: 37-196                                                                                                                                  ----RECA_3  PDB: C:1265-2273 UniProt: 201-274                                                                                                                                                                                                                                                                                                                  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_1   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmv C   37 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 3328
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       212       222       232       242       252       262       272       282       292       302       312       322     |1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189    ||1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315      1325  ||  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152   || 2170      2180      2190   || 2216      2226      2236      2246      2256      2266      2276      2286      2296      2306      2316      2326 ||   3013      3023      3033      3043      3053      3063      3073      3083      3093      3103      3113      3123      3133      3143      3167      3177      3187      3213      3223      3233      3243      3253      3263      3273      3283      3293      3303      3313      3323     
                                                                                                                                                                                       194|                                                                                                                  328|                                                                                                                                                                                        1194|                                                                                                                 1328|                                                                                                                                                  2156|                         2194|                                                                                                                 2328|                                                                                                                                             3151|                        3194|                                                                                                                     
                                                                                                                                                                                        211                                                                                                                  1006                                                                                                                                                                                         1211                                                                                                                  2006                                                                                                                                                   2165                          2211                                                                                                                  3006                                                                                                                                              3166                         3211                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:1175
 aligned with RECA_ECOLI | P0A7G6 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:1175
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             345                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                          1    6                7                                                                                                                                                                                         195        196  201                                 202 206                                                                                                                         207 211                                                                                                                 212                                                                                                                  329                             330        341                 342  |      346   352   353                                                                                                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -    |    6         -      | 10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    |    -     | 200|        -         -         -      |205|        -         -         -         -         -         -         -         -         -         -         -         -    |   |-         -         -         -         -         -         -         -         -         -         -         -    |  217       227       237       247       257       267       277       287       297       307       317       327 |       -         -         -   |   336    |    -         -    |  | -      |349  |     |-         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -     
          RECA_ECOLI      - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAIDEN----------------KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ----------IRMKIG-----------------------------------VMFGN---------------------------------------------------------------------------------------------------------------------------PETTT-------------------------------------------------------------------------------------------------------------------GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL-------------------------------SNPNSTPDFSVD-------------------DSEG--------VAETNED-----F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhh.eeee...hhhhhhhhhhhhhhh....eeeeehhhhh.hhhhhhh........hhhhhhhhhhhhhhhh......eeeeee....hhhhheeeeeeeee.............eeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh...........hhhhhhhhhhhhhhhhh...eeeeee....hhhhhh.eeeee......ee..ee.eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh...hhhhhhhhhhhhhhhhh...eeeeee....hhhhheeeeeeeee...ee....eeeeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee..........ee.....hhhhhh....ee...eeeee.....hhhhhhhhhhhhhhh....eeee......hhhhhhhhh.hhhhh......hhhhhhhhhhhhhhh....eeee.hhhhh......hhhhhhhhhhhhhhhhh.eeeeee....hhhhhh.eeeeeee...........eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_2  PDB: D:1036-1194 UniProt: 37-196                                                                                                                                  ----RECA_3  PDB: D:1265-2273 UniProt: 201-274                                                                                                                                                                                                                                                                                                                  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_1   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmv D   37 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 3328
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       212       222       232       242       252       262       272       282       292       302       312       322     |1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189    ||1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315      1325  ||  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152   || 2170      2180      2190   || 2216      2226      2236      2246      2256      2266      2276      2286      2296      2306      2316      2326 ||   3013      3023      3033      3043      3053      3063      3073      3083      3093      3103      3113      3123      3133      3143      3167      3177      3187      3213      3223      3233      3243      3253      3263      3273      3283      3293      3303      3313      3323     
                                                                                                                                                                                       194|                                                                                                                  328|                                                                                                                                                                                        1194|                                                                                                                 1328|                                                                                                                                                  2156|                         2194|                                                                                                                 2328|                                                                                                                                             3151|                        3194|                                                                                                                     
                                                                                                                                                                                        211                                                                                                                  1006                                                                                                                                                                                         1211                                                                                                                  2006                                                                                                                                                   2165                          2211                                                                                                                  3006                                                                                                                                              3166                         3211                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:1165
 aligned with RECA_ECOLI | P0A7G6 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:1173
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           345                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                        1    6                7                                                                                                                                                                                         195        196  201                                 202 206                                                                                                                         207 211                                                                                                                 212                                                                                                                  329                             330        341                 342  |      346   352   353                                                                                                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -  |    | -         -    |   12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192  |      -   |    |-         -         -         -    |   |-         -         -         -         -         -         -         -         -         -         -         -         -  |   |  -         -         -         -         -         -         -         -         -         -         -         -  |    219       229       239       249       259       269       279       289       299       309       319       329         -         -         - |     338  |      -         -  |  |   -    |  351|     |  -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -   
          RECA_ECOLI      - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAIDEN----------------KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ----------IRMKIG-----------------------------------VMFGN---------------------------------------------------------------------------------------------------------------------------PETTT-------------------------------------------------------------------------------------------------------------------GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL-------------------------------SNPNSTPDFSVD-------------------DSEG--------VAETNED-----F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhh.eeee...hhhhhhhhhhhhhhh....eeeeehhhhh.hhhhhhh......hhhhhhhhhhhhhhhh......eeeeee....hhhhheeeeeeeee.............eeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh--------...hhhhhhhhhhhhhhhhh...eeeeee....hhhhhh.eeeee......ee..ee.eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh...hhhhhhhhhhhhhhhhh...eeeeee....hhhhheeeeeeeee...ee....eeeeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee..........ee.....hhhhhh....ee...eeeee.....hhhhhhhhhhhhhhh....eeee......hhhhhhhhh.hhhhh......hhhhhhhhhhhhhhh....eeee.hhhhh......hhhhhhhhhhhhhhhhh.eeeeee....hhhhhh.eeeeeee...........eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_2  PDB: E:1036-1194 UniProt: 37-196                                                                                                                                  ----RECA_3  PDB: E:1265-2273 UniProt: 201-274                                                                                                                                                                                                                                                                                                                  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_1   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmv E   37 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEISHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE--------GLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 3328
                                    46        56        66        76        86        96       106       116       126       136       146       156  ||   168       178       188     ||214       224       234       244       254       264       274       284       294       304       314       324   || 1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151    |    -   |  1171      1181      1191  ||  1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327||    2014      2024      2034      2044      2054      2064      2074      2084      2094      2104      2114      2124      2134      2144      2154 ||   2172      2182      2192 ||   2218      2228      2238      2248      2258      2268      2278      2288      2298      2308      2318      2328|     3015      3025      3035      3045      3055      3065      3075      3085      3095      3105      3115      3125      3135      3145     |3169      3179      3189    ||3215      3225      3235      3245      3255      3265      3275      3285      3295      3305      3315      3325   
                                                                                                                                                    159|                             194|                                                                                                                  328|                                                                                                                                                  1156     1165                         1194|                                                                                                                 1328|                                                                                                                                                  2156|                         2194|                                                                                                                 2328|                                                                                                                                             3151|                        3194|                                                                                                                     
                                                                                                                                                     162                              211                                                                                                                  1006                                                                                                                                                                                         1211                                                                                                                  2006                                                                                                                                                   2165                          2211                                                                                                                  3006                                                                                                                                              3166                         3211                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:1175
 aligned with RECA_ECOLI | P0A7G6 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:1175
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             345                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                          1    6                7                                                                                                                                                                                         195        196  201                                 202 206                                                                                                                         207 211                                                                                                                 212                                                                                                                  329                             330        341                 342  |      346   352   353                                                                                                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -    |    6         -      | 10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    |    -     | 200|        -         -         -      |205|        -         -         -         -         -         -         -         -         -         -         -         -    |   |-         -         -         -         -         -         -         -         -         -         -         -    |  217       227       237       247       257       267       277       287       297       307       317       327 |       -         -         -   |   336    |    -         -    |  | -      |349  |     |-         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -     
          RECA_ECOLI      - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAIDEN----------------KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ----------IRMKIG-----------------------------------VMFGN---------------------------------------------------------------------------------------------------------------------------PETTT-------------------------------------------------------------------------------------------------------------------GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL-------------------------------SNPNSTPDFSVD-------------------DSEG--------VAETNED-----F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhh.eeee...hhhhhhhhhhhhhhh....eeeeehhhhh.hhhhhhh........hhhhhhhhhhhhhhhh......eeeeee....hhhhheeeeeeeee.............eeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh...........hhhhhhhhhhhhhhhhh...eeeeee....hhhhhh.eeeee......ee..ee.eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh...hhhhhhhhhhhhhhhhh...eeeeee....hhhhheeeeeeeee...ee....eeeeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee..........ee.....hhhhhh....ee...eeeee.....hhhhhhhhhhhhhhh....eeee......hhhhhhhhh.hhhhh......hhhhhhhhhhhhhhh....eeee.hhhhh......hhhhhhhhhhhhhhhhh.eeeeee....hhhhhh.eeeeeee...........eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_2  PDB: F:1036-1194 UniProt: 37-196                                                                                                                                  ----RECA_3  PDB: F:1265-2273 UniProt: 201-274                                                                                                                                                                                                                                                                                                                  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_1   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmv F   37 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 3328
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       212       222       232       242       252       262       272       282       292       302       312       322     |1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189    ||1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315      1325  ||  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152   || 2170      2180      2190   || 2216      2226      2236      2246      2256      2266      2276      2286      2296      2306      2316      2326 ||   3013      3023      3033      3043      3053      3063      3073      3083      3093      3103      3113      3123      3133      3143      3167      3177      3187      3213      3223      3233      3243      3253      3263      3273      3283      3293      3303      3313      3323     
                                                                                                                                                                                       194|                                                                                                                  328|                                                                                                                                                                                        1194|                                                                                                                 1328|                                                                                                                                                  2156|                         2194|                                                                                                                 2328|                                                                                                                                             3151|                        3194|                                                                                                                     
                                                                                                                                                                                        211                                                                                                                  1006                                                                                                                                                                                         1211                                                                                                                  2006                                                                                                                                                   2165                          2211                                                                                                                  3006                                                                                                                                              3166                         3211                                                                                                                     


Chain G from PDB  Type:PROTEIN  Length:1167
 aligned with RECA_ECOLI | P0A7G6 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:1175
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             345                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                          1    6                7                                                                                                                                                                                         195        196  201                                 202 206                                                                                                                         207 211                                                                                                                 212                                                                                                                  329                             330        341                 342  |      346   352   353                                                                                                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -    |    6         -      | 10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    |    -     | 200|        -         -         -      |205|        -         -         -         -         -         -         -         -         -         -         -         -    |   |-         -         -         -         -         -         -         -         -         -         -         -    |  217       227       237       247       257       267       277       287       297       307       317       327 |       -         -         -   |   336    |    -         -    |  | -      |349  |     |-         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -     
          RECA_ECOLI      - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAIDEN----------------KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ----------IRMKIG-----------------------------------VMFGN---------------------------------------------------------------------------------------------------------------------------PETTT-------------------------------------------------------------------------------------------------------------------GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL-------------------------------SNPNSTPDFSVD-------------------DSEG--------VAETNED-----F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhh.eeee...hhhhhhhhhhhhhhh....eeeeehhhhh.hhhhhhhh...hhhhhhhhhhhhhhhhhhhh......eeeeee....hhhhheeeeeeeee.............eeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh--------...hhhhhhhhhhhhhhhhh...eeeeee....hhhhhh.eeeee......ee..ee.eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh...hhhhhhhhhhhhhhhhh...eeeeee....hhhhheeeeeeeee...ee....eeeeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee..........ee.....hhhhhh....ee...eeeee.....hhhhhhhhhhhhhhh....eeee......hhhhhhhhh.hhhhh......hhhhhhhhhhhhhhh....eeee.hhhhh......hhhhhhhhhhhhhhhhh.eeeeee....hhhhhh.eeeeeee...........eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_2  PDB: G:1036-1194 UniProt: 37-196                                                                                                                                  ----RECA_3  PDB: G:1265-2273 UniProt: 201-274                                                                                                                                                                                                                                                                                                                  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_1   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmv G   37 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE--------GLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 3328
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       212       222       232       242       252       262       272       282       292       302       312       322     |1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      |  -     |1169      1179      1189    ||1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315      1325  ||  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152   || 2170      2180      2190   || 2216      2226      2236      2246      2256      2266      2276      2286      2296      2306      2316      2326 ||   3013      3023      3033      3043      3053      3063      3073      3083      3093      3103      3113      3123      3133      3143      3167      3177      3187      3213      3223      3233      3243      3253      3263      3273      3283      3293      3303      3313      3323     
                                                                                                                                                                                       194|                                                                                                                  328|                                                                                                                                                  1156     1165                         1194|                                                                                                                 1328|                                                                                                                                                  2156|                         2194|                                                                                                                 2328|                                                                                                                                             3151|                        3194|                                                                                                                     
                                                                                                                                                                                        211                                                                                                                  1006                                                                                                                                                                                         1211                                                                                                                  2006                                                                                                                                                   2165                          2211                                                                                                                  3006                                                                                                                                              3166                         3211                                                                                                                     


Chain H from PDB  Type:PROTEIN  Length:1173
 aligned with RECA_ECOLI | P0A7G6 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:1173
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           345                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                        1    6                7                                                                                                                                                                                         195        196  201                                 202 206                                                                                                                         207 211                                                                                                                 212                                                                                                                  329                             330        341                 342  |      346   352   353                                                                                                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -  |    | -         -    |   12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192  |      -   |    |-         -         -         -    |   |-         -         -         -         -         -         -         -         -         -         -         -         -  |   |  -         -         -         -         -         -         -         -         -         -         -         -  |    219       229       239       249       259       269       279       289       299       309       319       329         -         -         - |     338  |      -         -  |  |   -    |  351|     |  -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -   
          RECA_ECOLI      - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAIDEN----------------KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ----------IRMKIG-----------------------------------VMFGN---------------------------------------------------------------------------------------------------------------------------PETTT-------------------------------------------------------------------------------------------------------------------GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL-------------------------------SNPNSTPDFSVD-------------------DSEG--------VAETNED-----F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhh.eeee...hhhhhhhhhhhhhhh....eeeeehhhhh.hhhhhhh......hhhhhhhhhhhhhhhh......eeeeee....hhhhheeeeeeeee.............eeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhhh..........hhhhhhhhhhhhhhhhh...eeeeee....hhhhhh.eeeee......ee..ee.eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....ee..........ee...hhhhhhhhh...ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.hhhh.eee...hhhhhhhhhhhhhh.....eeeeehhhhh.hhhhhh...hhhhhhhhhhhhhhh.....eeeeee....hhhhheeeeeeeee...ee....eeeeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee..........ee.....hhhhhh....ee...eeeee.....hhhhhhhhhhhhhhh....eeee......hhhhhhhh..hhhhh......hhhhhhhhhhhhhh.....eeee.hhhhh......hhhhhhhhhhhhhhhhh.eeeeee....hhhhhh.eeeeeee...........eeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_2  PDB: H:1036-1194 UniProt: 37-196                                                                                                                                  ----RECA_3  PDB: H:1265-2273 UniProt: 201-274                                                                                                                                                                                                                                                                                                                  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RECA_1   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmv H   37 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEISHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 3328
                                    46        56        66        76        86        96       106       116       126       136       146       156  ||   168       178       188     ||214       224       234       244       254       264       274       284       294       304       314       324   || 1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191  ||  1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327||    2014      2024      2034      2044      2054      2064      2074      2084      2094      2104      2114      2124      2134      2144      2154 ||   2172      2182      2192 ||   2218      2228      2238      2248      2258      2268      2278      2288      2298      2308      2318      2328|     3015      3025      3035      3045      3055      3065      3075      3085      3095      3105      3115      3125      3135      3145     |3169      3179      3189    ||3215      3225      3235      3245      3255      3265      3275      3285      3295      3305      3315      3325   
                                                                                                                                                    159|                             194|                                                                                                                  328|                                                                                                                                                                                        1194|                                                                                                                 1328|                                                                                                                                                  2156|                         2194|                                                                                                                 2328|                                                                                                                                             3151|                        3194|                                                                                                                     
                                                                                                                                                     162                              211                                                                                                                  1006                                                                                                                                                                                         1211                                                                                                                  2006                                                                                                                                                   2165                          2211                                                                                                                  3006                                                                                                                                              3166                         3211
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CMV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CMV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CMV)

(-) Gene Ontology  (23, 23)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (RECA_ECOLI | P0A7G6)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008094    DNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
    GO:0003684    damaged DNA binding    Interacting selectively and non-covalently with damaged DNA.
    GO:0003690    double-stranded DNA binding    Interacting selectively and non-covalently with double-stranded DNA.
    GO:0004520    endodeoxyribonuclease activity    Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks.
    GO:0000400    four-way junction DNA binding    Interacting selectively and non-covalently with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0000150    recombinase activity    Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
    GO:0003697    single-stranded DNA binding    Interacting selectively and non-covalently with single-stranded DNA.
biological process
    GO:0006259    DNA metabolic process    Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
    GO:0000730    DNA recombinase assembly    The aggregation, arrangement and bonding together of strand exchange proteins (recombinases) into higher order oligomers on single-stranded DNA.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0009432    SOS response    An error-prone process for repairing damaged microbial DNA.
    GO:0048870    cell motility    Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0006312    mitotic recombination    The exchange, reciprocal or nonreciprocal, of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles.
    GO:0010212    response to ionizing radiation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
    GO:0042148    strand invasion    The process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  Cis Peptide Bonds
    Asp A:1144 - Ser A:1145   [ RasMol ]  
    Asp A:144 - Ser A:145   [ RasMol ]  
    Asp A:2144 - Ser A:2145   [ RasMol ]  
    Asp A:3144 - Ser A:3145   [ RasMol ]  
    Asp B:1144 - Ser B:1145   [ RasMol ]  
    Asp B:144 - Ser B:145   [ RasMol ]  
    Asp B:2144 - Ser B:2145   [ RasMol ]  
    Asp B:3144 - Ser B:3145   [ RasMol ]  
    Asp C:1144 - Ser C:1145   [ RasMol ]  
    Asp C:144 - Ser C:145   [ RasMol ]  
    Asp C:2144 - Ser C:2145   [ RasMol ]  
    Asp C:3144 - Ser C:3145   [ RasMol ]  
    Asp D:1144 - Ser D:1145   [ RasMol ]  
    Asp D:144 - Ser D:145   [ RasMol ]  
    Asp D:2144 - Ser D:2145   [ RasMol ]  
    Asp D:3144 - Ser D:3145   [ RasMol ]  
    Asp E:1144 - Ser E:1145   [ RasMol ]  
    Asp E:144 - Ser E:145   [ RasMol ]  
    Asp E:2144 - Ser E:2145   [ RasMol ]  
    Asp E:3144 - Ser E:3145   [ RasMol ]  
    Asp F:1144 - Ser F:1145   [ RasMol ]  
    Asp F:144 - Ser F:145   [ RasMol ]  
    Asp F:2144 - Ser F:2145   [ RasMol ]  
    Asp F:3144 - Ser F:3145   [ RasMol ]  
    Asp G:1144 - Ser G:1145   [ RasMol ]  
    Asp G:144 - Ser G:145   [ RasMol ]  
    Asp G:2144 - Ser G:2145   [ RasMol ]  
    Asp G:3144 - Ser G:3145   [ RasMol ]  
    Asp H:1144 - Ser H:1145   [ RasMol ]  
    Asp H:144 - Ser H:145   [ RasMol ]  
    Asp H:2144 - Ser H:2145   [ RasMol ]  
    Asp H:3144 - Ser H:3145   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        RECA_ECOLI | P0A7G6: 1aa3 1n03 1rea 1u94 1u98 1u99 1xms 1xmv 2reb 2rec 3cmt 3cmu 3cmw 3cmx 4twz

(-) Related Entries Specified in the PDB File

3cmt 3cmu 3cmw 3cmx