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(-) Description

Title :  CRYSTAL STRUCTURE OF CONSERVED EXPORTED PROTEIN FROM BACTEROIDES FRAGILIS
 
Authors :  J. B. Bonanno, M. Rutter, K. T. Bain, S. Chang, K. Ozyurt, D. Smith, S. Was J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
Date :  20 Mar 08  (Deposition) - 29 Apr 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Bonanno, M. Rutter, K. T. Bain, S. Chang, K. Ozyurt, D. Smith, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Conserved Exported Protein From Bacteroides Fragilis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED EXPORTED PROTEIN
    Atcc: 25285
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET26
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 27-522
    Gene: BF1510
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: NCTC 9343

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3CLW)

(-) Sites  (0, 0)

(no "Site" information available for 3CLW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CLW)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Ile A:252 -Pro A:253
2Tyr A:306 -Pro A:307
3Ile B:252 -Pro B:253
4Tyr B:306 -Pro B:307
5Ile C:252 -Pro C:253
6Tyr C:306 -Pro C:307
7Ile D:252 -Pro D:253
8Tyr D:306 -Pro D:307
9Ile E:252 -Pro E:253
10Tyr E:306 -Pro E:307
11Ile F:252 -Pro F:253
12Tyr F:306 -Pro F:307

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CLW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CLW)

(-) Exons   (0, 0)

(no "Exon" information available for 3CLW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:492
 aligned with Q5LF82_BACFN | Q5LF82 from UniProtKB/TrEMBL  Length:522

    Alignment length:492
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517  
         Q5LF82_BACFN    28 KKVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3clwA01     3clwA02 A:40-430 Glycosidases                                                                                                                                                                                                                                                                                                                                                                          3clwA01 A:28-39,A:431-519 Golgi alpha-mannosidase II                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh................eeee...................................hhhhhhhhhhhhhh....eeee....hhhhh..................hhhhhhhhhhhhhhhhhhh...eeeee.......hhhhh........hhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhh..........hhhhhhhh............eeeeeee.......hhhhhhhhhhhhhhhhhh.....eeee................hhhhhhhhhhhhhhhhhhhhhh....eeeeee.ee......eeee......hhhhhh..eeeehhhhhhhhhhhh......eeeeeee....hhhhhh..eeeeeee....eeeeeee.....eeeeee.....eeeeeee......eeeeeee...eee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3clw A  28 KKVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517  


Chain B from PDB  Type:PROTEIN  Length:492
 aligned with Q5LF82_BACFN | Q5LF82 from UniProtKB/TrEMBL  Length:522

    Alignment length:492
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517  
         Q5LF82_BACFN    28 KKVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3clwB01     3clwB02 B:40-430 Glycosidases                                                                                                                                                                                                                                                                                                                                                                          3clwB01 B:28-39,B:431-519 Golgi alpha-mannosidase II                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh................eeee...................................hhhhhhhhhhhhhh....eeee....hhhhh..................hhhhhhhhhhhhhhhhhh....eeeee.......hhhhh........hhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhh..........hhhhhhhh............eeeeeee.......hhhhhhhhhhhhhhhhhh.....eeee................hhhhhhhhhhhhhhhhhhhhhh....eeeeee.ee......eeee......hhhhhh..eeeehhhhhhhhhhhh......eeeeeee....hhhhhh..eeeeeee....eeeeeee.....eeeeee.....eeeeeeee..eeeeeeeeee...eee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3clw B  28 KKVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517  


Chain C from PDB  Type:PROTEIN  Length:491
 aligned with Q5LF82_BACFN | Q5LF82 from UniProtKB/TrEMBL  Length:522

    Alignment length:491
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518 
         Q5LF82_BACFN    29 KVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3clwC01    3clwC02 C:40-430 Glycosidases                                                                                                                                                                                                                                                                                                                                                                          3clwC01 C:29-39,C:431-519 Golgi alpha-mannosidase II                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh................eeee...................................hhhhhhhhhhhhhh....eeee...........................hhhhhhhhhhhhhhhhhh....eeeee.......hhhhh........hhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhh..........hhhhhhhh............eeeeeee.......hhhhhhhhhhhhhhhhhh.....eeee................hhhhhhhhhhhhhhhhhhhhhh....eeeeee.ee......eeee......hhhhhh..eeeehhhhhhhhhhhh......eeeeeee....hhhhhh..eeeeeee....eeeeeee.....eeeeee.....eeeeeeee..eeeeeeeeee...eee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3clw C  29 KVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518 


Chain D from PDB  Type:PROTEIN  Length:491
 aligned with Q5LF82_BACFN | Q5LF82 from UniProtKB/TrEMBL  Length:522

    Alignment length:491
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518 
         Q5LF82_BACFN    29 KVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3clwD01    3clwD02 D:40-430 Glycosidases                                                                                                                                                                                                                                                                                                                                                                          3clwD01 D:29-39,D:431-519 Golgi alpha-mannosidase II                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh................eeee...................................hhhhhhhhhhhhhh....eeee....hhhhh..................hhhhhhhhhhhhhhhhhhh...eeeee.......hhhhh........hhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhh..........hhhhhhhh............eeeeeee.......hhhhhhhhhhhhhhhhhh.....eeee................hhhhhhhhhhhhhhhhhhhhhh....eeeeee.ee......eeee......hhhhhh..eeeehhhhhhhhhhhh......eeeeeee....hhhhhhh.eeeeeee....eeeeeee.....eeeeee.....eeeeeeee..eeeeeeeeee...eee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3clw D  29 KVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518 


Chain E from PDB  Type:PROTEIN  Length:491
 aligned with Q5LF82_BACFN | Q5LF82 from UniProtKB/TrEMBL  Length:522

    Alignment length:491
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518 
         Q5LF82_BACFN    29 KVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3clwE01    3clwE02 E:40-430 Glycosidases                                                                                                                                                                                                                                                                                                                                                                          3clwE01 E:29-39,E:431-519 Golgi alpha-mannosidase II                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh................eeee...................................hhhhhhhhhhhhhh....eeee....hhhhh..................hhhhhhhhhhhhhhhhhh....eeeee....................hhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhh..........hhhhhhh.............eeeeeee.......hhhhhhhhhhhhhhhhhh.....eeee................hhhhhhhhhhhhhhhhhhhhhh....eeeeee.ee......eeee......hhhhhh..eeeehhhhhhhhhhhh......eeeeeee....hhhhhh..eeeeeee....eeeeeee.....eeeeee.....eeeeeee......eeeeeee...eee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3clw E  29 KVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518 


Chain F from PDB  Type:PROTEIN  Length:492
 aligned with Q5LF82_BACFN | Q5LF82 from UniProtKB/TrEMBL  Length:522

    Alignment length:492
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517  
         Q5LF82_BACFN    28 KKVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3clwF01     3clwF02 F:40-430 Glycosidases                                                                                                                                                                                                                                                                                                                                                                          3clwF01 F:28-39,F:431-519 Golgi alpha-mannosidase II                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh................eeee...................................hhhhhhhhhhhhhh....eeee....hhhhh..................hhhhhhhhhhhhhhhhhhh...eeeee.......hhhhh........hhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhh..........hhhhhhhh............eeeeeee.......hhhhhhhhhhhhhhhhhh.....eeee................hhhhhhhhhhhhhhhhhhhhhh....eeeeee.ee......eeee......hhhhhh..eeeehhhhhhhhhhhh......eeeeeee....hhhhhh..eeeeeee....eeeeeee.....eeeeeee....eeeeeeee..eeeeeeeeee...eee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3clw F  28 KKVFIIDKQTVYQEIDNFSASDAWRCAFIGKNWPQEKKEKIADLLFKREFDEKGNPIGMALTNWRVNIGAGSYENREAKEVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISEAQIDTKILIPEVGDMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKMLWTTANYSFFVRPGMKRIAIKPTYKISDLEAATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKKLQLPARSVATIVV 519
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CLW)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Golgi alpha-mannosidase II (346)
(-)
Bacteroides fragilis nctc 9343. Organism_taxid: 272559. Strain: nctc 9343. (1)
2a3clwC01C:29-39,C:431-519
2b3clwD01D:29-39,D:431-519
2c3clwE01E:29-39,E:431-519
2d3clwA01A:28-39,A:431-519
2e3clwB01B:28-39,B:431-519
2f3clwF01F:28-39,F:431-519

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CLW)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q5LF82_BACFN | Q5LF82)
molecular function
    GO:0004348    glucosylceramidase activity    Catalysis of the reaction: D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006665    sphingolipid metabolic process    The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).

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  3clw
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  Q5LF82_BACFN | Q5LF82
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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