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(-) Description

Title :  CRYSTAL STRUCTURE OF A MYCOBACTERIAL PROTEIN
 
Authors :  Z. Marland, J. Rossjohn
Date :  17 Mar 08  (Deposition) - 29 Jul 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Mycobacteria, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Fulton, A. Mcalister, M. C. Wilce, R. Brammananth, L. Zaker-Tabrizi, M. A. Perugini, S. P. Bottomley, R. L. Coppel, P. K. Crellin, J. Rossjohn, T. Beddoe
Crystal Structure Of A Udp-Glucose-Specific Glycosyltransferase From A Mycobacterium Species.
J. Biol. Chem. V. 283 27881 2008
PubMed-ID: 18667419  |  Reference-DOI: 10.1074/JBC.M801853200

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Organism Scientific: MYCOBACTERIUM PARATUBERCULOSIS
    Strain: K-10

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
3UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
3UDP2Ligand/IonURIDINE-5'-DIPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:17 , PRO A:114 , ARG A:116 , TYR A:308 , THR A:309 , GLN A:310 , ARG A:320BINDING SITE FOR RESIDUE SO4 A 330
2AC2SOFTWAREPRO A:55 , ALA A:56 , LEU A:57 , GLU A:59 , SER A:86 , GLY A:118 , LYS A:119 , ASP A:139 , SER A:140 , ASP A:141 , ARG A:266BINDING SITE FOR RESIDUE UDP A 331
3AC3SOFTWAREGLY A:189 , ARG A:190BINDING SITE FOR RESIDUE GOL A 332
4AC4SOFTWAREGLY A:189 , ARG A:190 , THR A:192BINDING SITE FOR RESIDUE GOL A 333

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CKV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3CKV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CKV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CKV)

(-) Exons   (0, 0)

(no "Exon" information available for 3CKV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:300
 aligned with GPGS_MYCPA | Q73WU1 from UniProtKB/Swiss-Prot  Length:329

    Alignment length:315
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324     
           GPGS_MYCPA    15 GLRDTRPGDTWLADRSWNRPGWTVAELEAAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVARPLLAALRPELGCILQPLGGEYAATRELLTSVPFAPGYGVEIGLLVDTFDRLGLDAIAQVNLGVREHRNRPLAELGAMSRQVIATLLSRCGIPDSGVGLTQFVADGPEGQSYTQHTWPVSLADRPPMQAIRPR 329
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee.....ee....hhhhhhhhh....eeeeeee.....hhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhh.eeeehhhhh.......hhhhhhhhhhhhh...eeee..........hhhhhhhhhhhh.....eeeeeee..---------------hhhhhhhhhhhhhhhhhhhhhh.......eeeehhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee......hhhhhhhhhhhhhhhhhhhh.........eeeee.......eeeee.........hhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ckv A  15 GLRDTRPGDTWLADRSWNRPGWTVAELEAAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRRP---------------GRVTELVARPLLAALRPELGCILQPLGGEYAATRELLTSVPFAPGYGVEIGLLVDTFDRLGLDAIAQVNLGVREHRNRPLAELGAMSRQVIATLLSRCGIPDSGVGLTQFVADGPEGQSYTQHTWPVSLADRPPMQAIRPR 329
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164        |-         -    |  194       204       214       224       234       244       254       264       274       284       294       304       314       324     
                                                                                                                                                                                        173             189
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CKV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CKV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CKV)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (GPGS_MYCPA | Q73WU1)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GPGS_MYCPA | Q73WU1: 3ckj 3ckn 3cko 3ckq

(-) Related Entries Specified in the PDB File

3ckj 3ckn 3kco 3kcq