3CK9 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   B. THETAIOTAOMICRON SUSD WITH MALTOHEPTAOSE

Authors :   N. M. Koropatkin, E. C. Martens, J. I. Gordon, T. J. Smith

Date :   14 Mar 08 (Deposition) - 20 May 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Tpr Repeat, Carbohydrate Binding, Starch Binding, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. M. Koropatkin, E. C. Martens, J. I. Gordon, T. J. Smith
Starch Catabolism By A Prominent Human Gut Symbiont Is Directed By The Recognition Of Amylose Helices.
Structure V. 16 1105 2008
PubMed-ID: 18611383 | Reference-DOI: 10.1016/J.STR.2008.03.017
(for further references see the PDB file header)

Molecule 1 - SUSD
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-28A
	Expression System Strain	:	ROSETTA(DE3)PLYSS
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 26-551
	Gene	:	SUSD
	Organism Scientific	:	BACTEROIDES THETAIOTAOMICRON
	Strain	:	VPI-5482

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 30)

No.	Name	Count	Type	Full Name
1	CA	4	Ligand/Ion	CALCIUM ION
2	EDO	13	Ligand/Ion	1,2-ETHANEDIOL
3	GLC	13	Ligand/Ion	ALPHA-D-GLUCOSE

Biological Unit 1 (2, 12)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
3	GLC	7	Ligand/Ion	ALPHA-D-GLUCOSE

Biological Unit 2 (2, 14)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	EDO	8	Ligand/Ion	1,2-ETHANEDIOL
3	GLC	6	Ligand/Ion	ALPHA-D-GLUCOSE

Asymmetric Unit (30, 30)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:73 , GLC A:802 , GLC A:807 , HOH A:947 , TRP B:224 , LYS B:252 , GLY B:255 , SER B:256	BINDING SITE FOR RESIDUE GLC A 801
02	AC2	SOFTWARE	GLC A:801 , GLC A:803 , GLU B:209 , TRP B:224 , LYS B:252 , HOH B:1015	BINDING SITE FOR RESIDUE GLC A 802
03	AC3	SOFTWARE	GLC A:802 , GLC A:804 , HOH A:1023 , GLU B:209 , HOH B:1015	BINDING SITE FOR RESIDUE GLC A 803
04	AC4	SOFTWARE	TRP A:98 , GLC A:803 , GLC A:805 , HOH A:1010	BINDING SITE FOR RESIDUE GLC A 804
05	AC5	SOFTWARE	TRP A:96 , TRP A:98 , ASN A:101 , TRP A:320 , SER A:321 , CYS A:322 , GLC A:804 , GLC A:806 , HOH A:946	BINDING SITE FOR RESIDUE GLC A 805
06	AC6	SOFTWARE	ARG A:81 , TYR A:296 , TRP A:320 , GLC A:805 , GLC A:807 , HOH A:1041 , HOH A:1064 , HOH A:1091	BINDING SITE FOR RESIDUE GLC A 806
07	AC7	SOFTWARE	ASP A:73 , GLU A:74 , GLY A:75 , GLC A:801 , GLC A:806 , HOH A:987	BINDING SITE FOR RESIDUE GLC A 807
08	AC8	SOFTWARE	ASP B:73 , GLU B:74 , GLY B:75 , TYR B:296 , EDO B:733 , GLC B:902 , HOH B:1122	BINDING SITE FOR RESIDUE GLC B 901
09	AC9	SOFTWARE	ARG B:81 , TRP B:320 , GLC B:901 , GLC B:903 , HOH B:1122 , HOH B:1126	BINDING SITE FOR RESIDUE GLC B 902
10	BC1	SOFTWARE	TRP B:96 , TRP B:98 , ASN B:101 , TRP B:320 , CYS B:322 , GLC B:902 , GLC B:904 , HOH B:1133	BINDING SITE FOR RESIDUE GLC B 903
11	BC2	SOFTWARE	ARG A:451 , HOH A:983 , TRP B:98 , GLC B:903 , GLC B:905 , HOH B:1029 , HOH B:1101 , HOH B:1133	BINDING SITE FOR RESIDUE GLC B 904
12	BC3	SOFTWARE	THR A:241 , TYR A:243 , ARG A:451 , HOH A:968 , GLC B:904 , GLC B:906	BINDING SITE FOR RESIDUE GLC B 905
13	BC4	SOFTWARE	GLC B:905	BINDING SITE FOR RESIDUE GLC B 906
14	BC5	SOFTWARE	ASP A:273 , GLN A:288 , ASP A:430 , ASP A:432 , HOH A:1134 , HOH A:1208 , HOH A:1214	BINDING SITE FOR RESIDUE CA A 600
15	BC6	SOFTWARE	GLU A:274 , EDO A:731 , HOH A:984 , HOH A:992 , HOH A:1031	BINDING SITE FOR RESIDUE CA A 710
16	BC7	SOFTWARE	ASP B:273 , GLN B:288 , ASP B:430 , ASP B:432 , HOH B:1053 , HOH B:1261 , HOH B:1292	BINDING SITE FOR RESIDUE CA B 700
17	BC8	SOFTWARE	GLU B:274 , HOH B:1153 , HOH B:1182 , HOH B:1188 , HOH B:1277 , HOH B:1278	BINDING SITE FOR RESIDUE CA B 720
18	BC9	SOFTWARE	TYR A:52 , GLY A:216 , HOH A:988 , HOH A:1076	BINDING SITE FOR RESIDUE EDO A 730
19	CC1	SOFTWARE	GLU A:274 , ARG A:417 , PRO A:422 , ASP A:430 , CA A:710 , HOH A:1135 , HOH A:1207 , GLY B:40 , EDO B:734	BINDING SITE FOR RESIDUE EDO A 731
20	CC2	SOFTWARE	GLN A:331 , GLN A:397 , TRP A:512 , ASP A:513	BINDING SITE FOR RESIDUE EDO A 736
21	CC3	SOFTWARE	GLY A:127 , THR A:131 , PRO A:174 , LYS A:176 , HOH A:1039	BINDING SITE FOR RESIDUE EDO A 737
22	CC4	SOFTWARE	ARG A:211 , PHE A:215 , MET A:279 , HOH A:847 , HOH A:991	BINDING SITE FOR RESIDUE EDO A 747
23	CC5	SOFTWARE	PHE A:450 , EDO B:733	BINDING SITE FOR RESIDUE EDO B 732
24	CC6	SOFTWARE	ASP B:73 , EDO B:732 , GLC B:901	BINDING SITE FOR RESIDUE EDO B 733
25	CC7	SOFTWARE	ASP A:289 , VAL A:291 , LYS A:292 , SER A:424 , EDO A:731 , GLY B:40 , PHE B:42 , HOH B:977	BINDING SITE FOR RESIDUE EDO B 734
26	CC8	SOFTWARE	TYR B:296 , THR B:300 , ASN B:318 , TRP B:320 , THR B:427 , TYR B:428	BINDING SITE FOR RESIDUE EDO B 741
27	CC9	SOFTWARE	ARG B:294 , TYR B:296 , TYR B:428	BINDING SITE FOR RESIDUE EDO B 742
28	DC1	SOFTWARE	GLY A:40 , PHE A:42 , ASP B:289 , VAL B:291 , LYS B:292 , HOH B:979	BINDING SITE FOR RESIDUE EDO B 744
29	DC2	SOFTWARE	ARG B:211 , PHE B:215 , HOH B:1114 , HOH B:1155	BINDING SITE FOR RESIDUE EDO B 748
30	DC3	SOFTWARE	GLN B:331 , GLN B:397 , TRP B:512 , ASP B:513 , HOH B:1195	BINDING SITE FOR RESIDUE EDO B 749

(no "SS Bond" information available for 3CK9)

(no "Cis Peptide Bond" information available for 3CK9)

(no "SAP(SNP)/Variant" information available for 3CK9)

(no "PROSITE Motif" information available for 3CK9)

(no "Exon" information available for 3CK9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:508
 aligned with SUSD_BACTN | Q8A1G2 from UniProtKB/Swiss-Prot  Length:551

    Alignment length:515
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546     
           SUSD_BACTN    37 QTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQENQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK 551
               SCOP domains d3ck9a_ A: Starch utiliz       ation system protein SusD                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------3ck9A02 A:210-307,A:412-490  [code=1.25.40.10, no name defined]                                   3ck9A03 A:308-411 SusD-like                                                                             3ck9A02 A:210-307,A:412-490  [code=1.25.40.10, no name defined]                ------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh......-------.....hhhhhhhhhhhhhhhhh....eee......hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhheeee.........eeeehhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.......hhhhhhh.....hhhhhh.eeeee...........hhhhhhhhhh...............eeehhhhhh....hhhhh...............hhhhhhhhhhhh..hhhhhhhhhh.....ee................hhhhh.ee......................eeeeehhhhhhhhhhhhhhh...hhhhhhhhhhhh.........hhhhhhhhhhhhhh...hhhhhhhhh...........hhhhh......hhhhhh...hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ck9 A  37 QTGGSFDQQGVFVKGYAMLGVTGQ-------DLDGQDEGESGFYRTTFNCNELPTDECLWAWQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK 551
                                    46        56   |     - |      76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546     
                                                  60      68

Chain B from PDB  Type:PROTEIN  Length:515
 aligned with SUSD_BACTN | Q8A1G2 from UniProtKB/Swiss-Prot  Length:551

    Alignment length:515
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546     
           SUSD_BACTN    37 QTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQENQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK 551
               SCOP domains d3ck9b_ B: Starch utilization system protein SusD                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------3ck9B02 B:210-307,B:412-490  [code=1.25.40.10, no name defined]                                   3ck9B03 B:308-411 SusD-like                                                                             3ck9B02 B:210-307,B:412-490  [code=1.25.40.10, no name defined]                ------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhh....eee......hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhheeee.........eeeehhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.......hhhhhhh.....hhhhhh.eeeee...........hhhhhhhhhh...............eeehhhhhh........................hhhhhhhhhhhh..hhhhhhhhhh.....ee................hhhhh.ee......................eeeeehhhhhhhhhhhhhhh...hhhhhhhhhhhh.........hhhhhhhhhhhhhh...hhhhhhhhh...........hhhhh......hhhhhh...hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ck9 B  37 QTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK 551
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: alpha-alpha superhelix (690)

Superfamily: TPR-like (83)

Family: SusD-like (7)

Protein domain: Starch utilization system protein SusD (5)

Bacteroides thetaiotaomicron [TaxId: 818] (5)

1a	d3ck9a_	A:
1b	d3ck9b_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Alpha Horseshoe (399)

Topology: Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat (320)

Homologous Superfamily: [code=1.25.40.10, no name defined] (42)

Bacteroides thetaiotaomicron. Strain: vpi-5482. (1)

1a	3ck9A02	A:210-307,A:412-490
1b	3ck9B02	B:210-307,B:412-490

Architecture: Orthogonal Bundle (10391)

Topology: TPR-like (5)

Homologous Superfamily: SusD-like (5)

Bacteroides thetaiotaomicron. Strain: vpi-5482. (1)

2a	3ck9A03	A:308-411
2b	3ck9B03	B:308-411

(no "Pfam Domain" information available for 3CK9)

Asymmetric Unit(hide GO term definitions)

Chain A,B (SUSD_BACTN | Q8A1G2)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:2001070	starch binding	Interacting selectively and non-covalently with starch.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0005983	starch catabolic process	The chemical reactions and pathways resulting in the breakdown of starch, the most important reserve polysaccharide in plants.
	GO:0005982	starch metabolic process	The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose.
cellular component
	GO:0009279	cell outer membrane	A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019867	outer membrane	The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GLC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]
		DC2	[ RasMol ]	+environment [ RasMol ]
		DC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3ck9)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3ck9
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	SUSD_BACTN \| Q8A1G2
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	SUSD_BACTN \| Q8A1G2
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	SUSD_BACTN \| Q8A1G2	:	3ck7 3ck8 3ckb 3ckc

3ck7	B. THETAIOTAOMICRON SUSD WITH ALPHA-CYCLODEXTRIN
3ck8	B. THETAIOTAOMICRON SUSD WITH BETA-CYCLODEXTRIN
3ckb	B. THETAIOTAOMICRON SUSD WITH MALTOTRIOSE
3ckc	B. THETAIOTAOMICRON SUSD

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 30)

Sites (30, 30)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File