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(-) Description

Title :  CRYSTAL STRUCTURE OF PCI DOMAIN FROM A. THALIANA COP9 SIGNALOSOME SUBUNIT 7 (CSN7)
 
Authors :  M. Dessau, J. A. Hirsch
Date :  10 Mar 08  (Deposition) - 28 Oct 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Heat/Arm Repeats, Winged Helix Motif, Developmental Protein, Nucleus, Phosphoprotein, Phytochrome Signaling Pathway, Signalosome, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Dessau, Y. Halimi, T. Erez, O. Chomsky-Hecht, D. A. Chamovitz, J. A. Hirsch
The Arabidopsis Cop9 Signalosome Subunit 7 Is A Model Pci Domain Protein With Subdomains Involved In Cop9 Signalosome Assembly
Plant Cell V. 20 2815 2008
PubMed-ID: 18854373  |  Reference-DOI: 10.1105/TPC.107.053801
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COP9 SIGNALOSOME COMPLEX SUBUNIT 7
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-28A
    Expression System StrainTUNER DE3 CODON(+)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentPCI DOMAIN
    GeneFUS5
    Organism CommonMOUSE-EAR CRESS
    Organism ScientificARABIDOPSIS THALIANA
    Organism Taxid3702
    SynonymCSN COMPLEX SUBUNIT 7, PROTEIN FUSCA 5

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:55 , ASP A:161 , HOH A:375 , HOH A:376 , HOH A:377 , HOH A:378 , HOH A:379BINDING SITE FOR RESIDUE MG A 170
2AC2SOFTWAREPHE A:42 , SER A:43 , ALA A:70 , ARG A:160 , HOH A:184 , HOH A:415BINDING SITE FOR RESIDUE MG A 171
3AC3SOFTWAREGLY A:139 , PHE A:156 , ALA A:158 , HOH A:246BINDING SITE FOR RESIDUE ACT A 172
4AC4SOFTWAREGLY A:139 , ARG A:142 , HOH A:292 , HOH A:418BINDING SITE FOR RESIDUE ACT A 173
5AC5SOFTWARESER A:23 , GLU A:24 , THR A:57 , THR A:58 , ASP A:59BINDING SITE FOR RESIDUE ACT A 174

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CHM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:4 -Gln A:5

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CHM)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3CHM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with CSN7_ARATH | Q94JU3 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:161
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163 
           CSN7_ARATH     4 EQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRP 164
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhh..hhhhhhhhhhhh......eeeeee....eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3chm A   4 EQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRP 164
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CHM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CHM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CHM)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CSN7_ARATH | Q94JU3)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0010387    COP9 signalosome assembly    The aggregation, arrangement and bonding together of a set of components to form a COP9 signalosome.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0010017    red or far-red light signaling pathway    The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
    GO:0009585    red, far-red light phototransduction    The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
cellular component
    GO:0008180    COP9 signalosome    A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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