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(-) Description

Title :  ANEMONIA SULCATA RED FLUORESCENT PROTEIN ASRFP
 
Authors :  G. S. Kachalova, S. Gundel, J. Wiedenmann, H. D. Bartunik
Date :  03 Mar 08  (Deposition) - 10 Mar 09  (Release) - 24 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,G,H,L,M,R,S
Keywords :  Beta Barrel, Fluorescent Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Gundel, G. S. Kachalova, F. Oswald, J. Fuchs, H. D. Bartunik, G. U. Nienhaus, J. Wiedenmann
Structure Of Anemonia Sulcata Red Fluorescent Protein Asrfp
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GFP-LIKE FLUORESCENT PROTEIN
    Chains: L, M, R, S
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET17B
    Expression System Strain: BL21 DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: MEDITERRANEAN SNAKELOCKS SEA ANEMONE
    Organism Scientific: ANEMONIA SULCATA
    Organism Taxid: 6108
    Synonym: RED FLUORESCENT PROTEIN ASRFP
 
Molecule 2 - GFP-LIKE FLUORESCENT PROTEIN
    Chains: A, B, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET17B
    Expression System Strain: BL21 DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: MEDITERRANEAN SNAKELOCKS SEA ANEMONE
    Organism Scientific: ANEMONIA SULCATA
    Organism Taxid: 6108
    Synonym: RED FLUORESCENT PROTEIN ASRFP

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABGHLMRS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1CME8Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2NRQ4Mod. Amino Acid{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 3CFA)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:144 -B:144
2G:144 -H:144

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Gly L:49 -Pro L:50
2Phe A:84 -Pro A:85
3Gly M:49 -Pro M:50
4Phe B:84 -Pro B:85
5Gly R:49 -Pro R:50
6Phe G:84 -Pro G:85
7Gly S:49 -Pro S:50
8Phe H:84 -Pro H:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CFA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CFA)

(-) Exons   (0, 0)

(no "Exon" information available for 3CFA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
 aligned with NFCP_ANESU | Q9GZ28 from UniProtKB/Swiss-Prot  Length:232

    Alignment length:168
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224        
           NFCP_ANESU    65 GSKTFIKYVSGIPDYFKQSFPEGFTWERTTTYEDGGFLTAHQDTSLDGDCLVYKVKILGNNFPADGPVMQNKAGRWEPATEIVYEVDGVLRGQSLMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFHFEDHRIEIMEEVEKGKCYKQYEAAVGRYCDAAPSKLGHN 232
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......ee.....hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeee..eeeeeeeeeeee...eeeeeeeeeeeee..hhhhh.....eeeeeeeee-eeee...eeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cfa A  65 mSKTFIKYVSGIPDYFKQSFPEGFTWERTTTYEDGGFLTAHQDTSLDGDcLVYKVKILGNNFPADGPVMQNKAGGWEPSCEILYEVDGVLCGQSLMALKCPGGRHLNCRLHTTYRSKKPASALKMPEFHFEDHRIEV-KEVQKGKHYEQYEAAVARYcDAAPSKLGHH 231
                            |       74        84        94       104       114       124       134       144       154       164       174       184       194      |203       213       223        
                            |                                              114-CME                                                                                201 |                221-CME      
                           65-NRQ                                                                                                                                   202                             


Chain B from PDB  Type:PROTEIN  Length:167
 aligned with NFCP_ANESU | Q9GZ28 from UniProtKB/Swiss-Prot  Length:232

    Alignment length:168
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224        
           NFCP_ANESU    65 GSKTFIKYVSGIPDYFKQSFPEGFTWERTTTYEDGGFLTAHQDTSLDGDCLVYKVKILGNNFPADGPVMQNKAGRWEPATEIVYEVDGVLRGQSLMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFHFEDHRIEIMEEVEKGKCYKQYEAAVGRYCDAAPSKLGHN 232
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......ee.......hhhhh...eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeee..eeeeeeeeeeee...eeeeeeeeeeeee..hhhhh.....eeeeeeeee-eeee...eeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cfa B  65 mSKTFIKYVSGIPDYFKQSFPEGFTWERTTTYEDGGFLTAHQDTSLDGDcLVYKVKILGNNFPADGPVMQNKAGGWEPSCEILYEVDGVLCGQSLMALKCPGGRHLNCRLHTTYRSKKPASALKMPEFHFEDHRIEV-KEVQKGKHYEQYEAAVARYcDAAPSKLGHH 231
                            |       74        84        94       104       114       124       134       144       154       164       174       184       194      |203       213       223        
                           65-NRQ                                          114-CME                                                                                201 |                221-CME      
                                                                                                                                                                    202                             


Chain G from PDB  Type:PROTEIN  Length:167
 aligned with NFCP_ANESU | Q9GZ28 from UniProtKB/Swiss-Prot  Length:232

    Alignment length:168
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224        
           NFCP_ANESU    65 GSKTFIKYVSGIPDYFKQSFPEGFTWERTTTYEDGGFLTAHQDTSLDGDCLVYKVKILGNNFPADGPVMQNKAGRWEPATEIVYEVDGVLRGQSLMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFHFEDHRIEIMEEVEKGKCYKQYEAAVGRYCDAAPSKLGHN 232
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......ee.......hhhhh...eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeee..eeeeeeeeeeee...eeeeeeeeeeeee..hhhhh.....eeeeeeeee-eeee...eeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cfa G  65 mSKTFIKYVSGIPDYFKQSFPEGFTWERTTTYEDGGFLTAHQDTSLDGDcLVYKVKILGNNFPADGPVMQNKAGGWEPSCEILYEVDGVLCGQSLMALKCPGGRHLNCRLHTTYRSKKPASALKMPEFHFEDHRIEV-KEVQKGKHYEQYEAAVARYcDAAPSKLGHH 231
                            |       74        84        94       104       114       124       134       144       154       164       174       184       194      |203       213       223        
                           65-NRQ                                          114-CME                                                                                201 |                221-CME      
                                                                                                                                                                    202                             


Chain H from PDB  Type:PROTEIN  Length:167
 aligned with NFCP_ANESU | Q9GZ28 from UniProtKB/Swiss-Prot  Length:232

    Alignment length:168
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224        
           NFCP_ANESU    65 GSKTFIKYVSGIPDYFKQSFPEGFTWERTTTYEDGGFLTAHQDTSLDGDCLVYKVKILGNNFPADGPVMQNKAGRWEPATEIVYEVDGVLRGQSLMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFHFEDHRIEIMEEVEKGKCYKQYEAAVGRYCDAAPSKLGHN 232
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......ee.......hhhhh...eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeee..eeeeeeeeeeee...eeeeeeeeeeeee..hhhhh.....eeeeeeeee-eeee...eeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3cfa H  65 mSKTFIKYVSGIPDYFKQSFPEGFTWERTTTYEDGGFLTAHQDTSLDGDcLVYKVKILGNNFPADGPVMQNKAGGWEPSCEILYEVDGVLCGQSLMALKCPGGRHLNCRLHTTYRSKKPASALKMPEFHFEDHRIEV-KEVQKGKHYEQYEAAVARYcDAAPSKLGHH 231
                            |       74        84        94       104       114       124       134       144       154       164       174       184       194      |203       213       223        
                           65-NRQ                                          114-CME                                                                                201 |                221-CME      
                                                                                                                                                                    202                             


Chain L from PDB  Type:PROTEIN  Length:58
 aligned with NFCP_ANESU | Q9GZ28 from UniProtKB/Swiss-Prot  Length:232

    Alignment length:58
                                    14        24        34        44        54        
           NFCP_ANESU     5 LKKTMPFKTTIEGTVNGHYFKCTGKGEGNPFEGTQEMKIEVIEGGPLPFAFHILSTSC  62
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee......hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 3cfa L   5 LTETMPFRMTMEGTVNGHHFKCTGKGEGNPFEGTQDMKIEVIEGGPLPFAFDILSTSC  62
                                    14        24        34        44        54        


Chain M from PDB  Type:PROTEIN  Length:59
 aligned with NFCP_ANESU | Q9GZ28 from UniProtKB/Swiss-Prot  Length:232

    Alignment length:59
                                    13        23        33        43        53         
           NFCP_ANESU     4 FLKKTMPFKTTIEGTVNGHYFKCTGKGEGNPFEGTQEMKIEVIEGGPLPFAFHILSTSC  62
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee......hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                 3cfa M   4 LLTETMPFRMTMEGTVNGHHFKCTGKGEGNPFEGTQDMKIEVIEGGPLPFAFDILSTSC  62
                                    13        23        33        43        53         


Chain R from PDB  Type:PROTEIN  Length:58
 aligned with NFCP_ANESU | Q9GZ28 from UniProtKB/Swiss-Prot  Length:232

    Alignment length:58
                                    14        24        34        44        54        
           NFCP_ANESU     5 LKKTMPFKTTIEGTVNGHYFKCTGKGEGNPFEGTQEMKIEVIEGGPLPFAFHILSTSC  62
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee......hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 3cfa R   5 LTETMPFRMTMEGTVNGHHFKCTGKGEGNPFEGTQDMKIEVIEGGPLPFAFDILSTSC  62
                                    14        24        34        44        54        


Chain S from PDB  Type:PROTEIN  Length:59
 aligned with NFCP_ANESU | Q9GZ28 from UniProtKB/Swiss-Prot  Length:232

    Alignment length:59
                                    13        23        33        43        53         
           NFCP_ANESU     4 FLKKTMPFKTTIEGTVNGHYFKCTGKGEGNPFEGTQEMKIEVIEGGPLPFAFHILSTSC  62
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee......hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                 3cfa S   4 LLTETMPFRMTMEGTVNGHHFKCTGKGEGNPFEGTQDMKIEVIEGGPLPFAFDILSTSC  62
                                    13        23        33        43        53
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CFA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CFA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CFA)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,G,H,L,M,R,S   (NFCP_ANESU | Q9GZ28)
biological process
    GO:0008218    bioluminescence    The production of light by certain enzyme-catalyzed reactions in cells.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.

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  Cis Peptide Bonds
    Gly L:49 - Pro L:50   [ RasMol ]  
    Gly M:49 - Pro M:50   [ RasMol ]  
    Gly R:49 - Pro R:50   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NFCP_ANESU | Q9GZ28: 1xmz 1xqm 2a50 2a52 2a53 2a54 2a56 3cff 3cfh

(-) Related Entries Specified in the PDB File

1xmz GFP-LIKE CHROMOPROTEIN FP595
1xqm GFP-LIKE CHROMOPROTEIN FP595
2a50 FLUORESCENT PROTEIN ASFP595, WT, OFF-STATE
3cff PHOTOSWITCHABLE RED FLUORESCENT PROTEIN PSRFP, ON-STATE
3cfh PHOTOSWITCHABLE RED FLUORESCENT PROTEIN PSRFP, OFF-STATE