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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN ENCODED BY CRYPTIC PROPHAGE
 
Authors :  R. Sugadev, S. K. Burley, S. Swaminathan, S. Ozyurt, J. Luz, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  30 Jan 08  (Deposition) - 19 Feb 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  10179A, Uncharacterized Protein, Psi-Ii, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Sugadev, S. K. Burley, S. Swaminathan
Crystal Structure Of An Uncharacterized Protein Encoded By Cryptic Prophage.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Atcc: 700928
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: C1411
    Organism Scientific: ESCHERICHIA COLI O6
    Organism Taxid: 217992

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 22)

Asymmetric/Biological Unit (1, 22)
No.NameCountTypeFull Name
1MSE22Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3C4R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3C4R)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Phe A:39 -Pro A:40
2Phe B:39 -Pro B:40
3Phe C:39 -Pro C:40
4Phe D:39 -Pro D:40

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3C4R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3C4R)

(-) Exons   (0, 0)

(no "Exon" information available for 3C4R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
 aligned with A0A0H2V6G8_E | A0A0H2V6G8 from UniProtKB/TrEMBL  Length:141

    Alignment length:124
                                    11        21        31        41        51        61        71        81        91       101       111       121    
         A0A0H2V6G8_E     2 KIKHEHIRMAMNAWAHPDGEKVPAAEITRAYFELGMTFPELYDDSHPEALARNTQKIFRWVEKDTPDAVEKIQALLPAIEKSMPPLLVARMRSHSSAYFRELVETRERLVRDADDFVAVAIAGF 125
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3c4rA00 A:2-125 uncharacterized protein encoded by cryptic prophage domain                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c4r A   2 KIKHEHIRmAmNAWAHPDGEKVPAAEITRAYFELGmTFPELYDDSHPEALARNTQKIFRWVEKDTPDAVEKIQALLPAIEKSmPPLLVARmRSHSSAYFRELVETRERLVRDADDFVAVAIAGF 125
                                    11|       21        31     |  41        51        61        71        81  |     91|      101       111       121    
                                   10-MSE                     37-MSE                                         84-MSE  92-MSE                             
                                     12-MSE                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:124
 aligned with A0A0H2V6G8_E | A0A0H2V6G8 from UniProtKB/TrEMBL  Length:141

    Alignment length:124
                                    11        21        31        41        51        61        71        81        91       101       111       121    
         A0A0H2V6G8_E     2 KIKHEHIRMAMNAWAHPDGEKVPAAEITRAYFELGMTFPELYDDSHPEALARNTQKIFRWVEKDTPDAVEKIQALLPAIEKSMPPLLVARMRSHSSAYFRELVETRERLVRDADDFVAVAIAGF 125
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3c4rB00 B:2-125 uncharacterized protein encoded by cryptic prophage domain                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c4r B   2 KIKHEHIRmAmNAWAHPDGEKVPAAEITRAYFELGmTFPELYDDSHPEALARNTQKIFRWVEKDTPDAVEKIQALLPAIEKSmPPLLVARmRSHSSAYFRELVETRERLVRDADDFVAVAIAGF 125
                                    11|       21        31     |  41        51        61        71        81  |     91|      101       111       121    
                                   10-MSE                     37-MSE                                         84-MSE  92-MSE                             
                                     12-MSE                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:127
 aligned with A0A0H2V6G8_E | A0A0H2V6G8 from UniProtKB/TrEMBL  Length:141

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
         A0A0H2V6G8_E     2 KIKHEHIRMAMNAWAHPDGEKVPAAEITRAYFELGMTFPELYDDSHPEALARNTQKIFRWVEKDTPDAVEKIQALLPAIEKSMPPLLVARMRSHSSAYFRELVETRERLVRDADDFVAVAIAGFNQM 128
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3c4rC00 C:2-127 uncharacterized protein encoded by cryptic prophage domain                                                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c4r C   2 KIKHEHIRmAmNAWAHPDGEKVPAAEITRAYFELGmTFPELYDDSHPEALARNTQKIFRWVEKDTPDAVEKIQALLPAIEKSmPPLLVARmRSHSSAYFRELVETRERLVRDADDFVAVAIAGFNQm 128
                                    11|       21        31     |  41        51        61        71        81  |     91|      101       111       121      |
                                   10-MSE                     37-MSE                                         84-MSE  92-MSE                             128-MSE
                                     12-MSE                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:127
 aligned with A0A0H2V6G8_E | A0A0H2V6G8 from UniProtKB/TrEMBL  Length:141

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
         A0A0H2V6G8_E     2 KIKHEHIRMAMNAWAHPDGEKVPAAEITRAYFELGMTFPELYDDSHPEALARNTQKIFRWVEKDTPDAVEKIQALLPAIEKSMPPLLVARMRSHSSAYFRELVETRERLVRDADDFVAVAIAGFNQM 128
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3c4rD00 D:2-127 uncharacterized protein encoded by cryptic prophage domain                                                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c4r D   2 KIKHEHIRmAmNAWAHPDGEKVPAAEITRAYFELGmTFPELYDDSHPEALARNTQKIFRWVEKDTPDAVEKIQALLPAIEKSmPPLLVARmRSHSSAYFRELVETRERLVRDADDFVAVAIAGFNQm 128
                                    11|       21        31     |  41        51        61        71        81  |     91|      101       111       121      |
                                   10-MSE                     37-MSE                                         84-MSE  92-MSE                             128-MSE
                                     12-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3C4R)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3C4R)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3C4R)

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  Cis Peptide Bonds
    Phe A:39 - Pro A:40   [ RasMol ]  
    Phe B:39 - Pro B:40   [ RasMol ]  
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    Phe D:39 - Pro D:40   [ RasMol ]  
 

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